Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001542305.1_202016-01- 27] 61 sequences; 20,750,089 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq13 113 2e-19 seq2 87.8 7e-12 seq17 86.0 3e-11 seq4 86.0 3e-11 >seq13 Length=1522988 Score = 113 bits (124), Expect = 2e-19 Identities = 265/394 (67%), Gaps = 16/394 (4%) Strand=Plus/Minus Query 88929 ACCTTCATCATGGCCGATGCCGAGAGCCGCGG--ACGGGCCGTGGCGCGCAAGTTCACCG 88986 |||||||||||| ||| ||| |||| | || | | ||| |||||| ||| || Sbjct 914284 ACCTTCATCATGCCCG--GCCAGGAGCTGAGGCGAAAGAACGTCCGCCGCAAGCTCAACG 914227 Query 88987 CCGTGGGCCGAGAGTGCAGGGACAAGGCCGTGGTCGTGGTGGACGACTCTGTCGTGCGCG 89046 | ||| || |||| | | |||| ||| | | || |||||||| | ||||||| Sbjct 914226 CGATGGCCCTCGAGTTCGCCGGCAAGAACGTCATGATCGTCGACGACTCGATTGTGCGCG 914167 Query 89047 GCACCACATCCAAGTTCATAATCGACCTCCTTCGCAAGTCTGGCGCCACCAAGGTCTACC 89106 | || || || ||| || |||| | | ||| || | ||||||| |||||| | Sbjct 914166 GGACAACCTCGAAGGAGATTATCGTCATGGCGCGCGAGGCGGGCGCCAAGAAGGTCATCA 914107 Query 89107 TCGCTTCTTGCTCTCCCCCGATCCGTTACCCCAACGTGTACGGCATCGACATACC--GTC 89164 | ||||||||| |||| || ||||| ||||| |||||||||||| || || || ||| Sbjct 914106 TGGCTTCTTGCGCTCCTCCCATCCGCTACCCTTGCGTGTACGGCATTGATATGCCGAGTC 914047 Query 89165 GGCCAAGGAGCTCATTGCTTCTGGTCGCACCGAGCACGAGGTGGCTCTCCTCCTCGGAGC 89224 | | | |||||| | || | ||||| ||| |||| | || | |||| || Sbjct 914046 G--CCATGAGCTCGTCGCACACGACCGCACGGAGGACGAAATCGCCGAGTACATCGGCGC 913989 Query 89225 CGACCAGGTCATCTATCAGAGTGTCGACGAC----TTGCAAGCGGCCTGTCGCCAGTTCA 89280 |||||| |||||| |||| |||||||| | | ||| ||| | |||| ||| Sbjct 913988 CGACCACATCATCTTCCAGACACTCGACGACCTCGTCTCCAGCTGCCAG-CGCC---TCA 913933 Query 89281 ATCCCTCCATCACGGCCTTTGAGGCCTCTGTCTT 89314 | ||||||||| | ||| ||| ||| ||||| Sbjct 913932 ACCCCTCCATCGAGCGCTTCGAGTGCTCCGTCTT 913899 >seq2 Length=1701455 Score = 87.8 bits (96), Expect = 7e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 349032 CGAGGTAGACCGACGCATTGGGCTTCTTCATCTTGGGCGTGGCGTCGAGAATCTCCTTGA 349091 |||||||||| | || ||| |||| | ||| | | ||| || |||||||||| Sbjct 1419585 CGAGGTAGACGGTCGTCGACGGCGTCTTGAGGTTGACGGCGACGTTGATGATCTCCTTGA 1419526 Query 349092 GTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGA 349151 | | || | || || || |||||||| | || || ||||| ||||||| || | || Sbjct 1419525 GACGCGGTACACCGAGCGTGACGTTCTTTGACGACACACCGGCGTAGTGGAACGTGTTGA 1419466 Query 349152 GGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGC 349211 | |||| |||||| ||||| || || |||| ||||||| |||| |||||||| Sbjct 1419465 GCGTCATCTGCGTCGCCGGCTCACCAATCGACTGCGCCGCGAGCGTGCCGCACATCTCGC 1419406 Query 349212 CGGGCGCG 349219 | |||||| Sbjct 1419405 CCGGCGCG 1419398 >seq17 Length=175078 Score = 86.0 bits (94), Expect = 3e-11 Identities = 174/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 448987 CTCGAGCAACATGGCGTA-GGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGT 449045 ||||| ||| ||||| | |||||||||||| ||| ||| || ||||| ||||| | || Sbjct 59836 CTCGACCAA-ATGGCCGATGGTCATGCGCGAGGGGATGGCGTGAGGGTTGATGATCAGGT 59894 Query 449046 CGGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGA 449105 ||||||| || | || ||| |||||||||||| || | | |||| | Sbjct 59895 CGGGCGTGATCCCCTCTGCCGAGAACGGCATGTCCTCGTGGCGGTAGGTAATGCCGATCG 59954 Query 449106 CGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGGCTTGCGTGTGAAGC 449165 |||||||| |||||||| | ||||||||| || ||||||| || || ||| Sbjct 59955 TACCCTTCTGACCGTGGCGAGAGGCGAACTTGTCACCGATCTCGGGCACACGGGTCGAGC 60014 Query 449166 GCAGCACGATCTTGATGGAGCGGAAGCCGTCCCTGTTGGTGGTGTCGATGACCGACTCCA 449225 | | |||||||| | || ||| ||| |||||| ||| || |||| || | Sbjct 60015 GGATACGGATCTTGACAAACTTGAGGCCTTCCGAGTTGGTCGTGAGGAGGACCTGGTCGA 60074 Query 449226 CGACGGCGTCGTCGGT 449241 ||| | ||| ||||| Sbjct 60075 CGAGGCCGTTCTCGGT 60090 >seq4 Length=766227 Score = 86.0 bits (94), Expect = 3e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 |||||||| | || || ||||||||||| ||| | | |||||||||||||| | ||| Sbjct 188852 CTCGAGCATCTTGCCGACCGTCATGCGCGAGGGGAAACCGTGCGGGTTCATGATCACGTC 188793 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGAC 449106 ||| ||| ||||||| ||||||||||| | ||| | || ||| ||| Sbjct 188792 GGGGCAGATGCCCTGGTCGTTGAACGGCATGTCCTCCTGCGGGACGATGAGACCGCAGAC 188733 Query 449107 GCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGG 449151 |||||||| |||||||| |||||||||| || |||| || Sbjct 188732 ACCCTTCTGACCGTGGCGAGACGAGAACTTGTCTCCGAGCTCAGG 188688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084737530905678