Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq50 250 2e-61 seq4 95.1 1e-14 seq21 82.4 6e-11 >seq50 Length=15404 Score = 250 bits (276), Expect = 2e-61 Identities = 394/560 (70%), Gaps = 6/560 (1%) Strand=Plus/Plus Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372 ||| || || | ||| || ||||| ||| || || || || ||||||||||| |||| Sbjct 1315 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGCAAAGAA 1374 Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432 | ||||| || || |||||| ||||||| || ||||| | |||||||||||| || Sbjct 1375 CAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 1434 Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492 ||||||||| ||||| || || |||||||||||||||| |||| || ||| ||| || Sbjct 1435 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCGCC 1494 Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552 |||||||||||||| ||| |||||| | || || | ||| || | || ||||| || Sbjct 1495 CTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 1554 Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACC 66612 | ||| || |||||| ||||| || || || || || | ||| | ||||| Sbjct 1555 GTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATCGAGAGACC 1614 Query 66613 AATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGC--CACTGTCCGGAATATGCCG 66670 || || ||||||||||| |||||| ||| | || | | || | | ||||| Sbjct 1615 GATGCCGCCGGCCGTCTTGGAGATG--AGCGCGCACGTCTTGAGCGTGTCGTAGATGCCC 1672 Query 66671 TCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTG 66730 || || ||||| |||| || || | |||| |||| || || || || | || ||| Sbjct 1673 TCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCGTG 1732 Query 66731 GCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTAC 66790 |||| |||||| || || | |||||||||||||| | |||||| |||||| Sbjct 1733 CCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTAC 1792 Query 66791 GTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC-ACATCGCATCAGGAG 66849 |||||||| | ||||||| ||||| || || |||| || ||| ||||| || | Sbjct 1793 GTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACA-CGCATGAGCAT 1851 Query 66850 GTATTGAGGCCGTTCGACCA 66869 || || || || ||| ||| Sbjct 1852 GTGCTGCGGTCGCTCGGCCA 1871 >seq4 Length=1400164 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 61700 TTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCA 61759 |||| |||||||| ||||| ||||| || || || || || |||||||| || | Sbjct 525782 TTCGCGAGGCGGTCGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTTA 525841 Query 61760 TCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGG 61819 |||||||||| | | || |||| ||||| || || || || || ||||| || | Sbjct 525842 TCGGCATGAACAGCGACCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTA 525901 Query 61820 TCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGA 61879 ||| | || | || |||||| | | | | ||||| || || || |||||||||| Sbjct 525902 TCGCACTCGGCAACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGA 525961 Query 61880 TTTCGCTGGATGGCAAGACGAA 61901 | ||| |||| |||||||| || Sbjct 525962 TCTCGATGGAGGGCAAGACCAA 525983 >seq21 Length=262679 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 ||||| | || ||||| ||||| |||||||| ||||| || ||||| || |||| | Sbjct 18850 CATGTCCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAACTTGGTGGAGAGG 18791 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGAT 61316 ||| || |||||||| | | ||||| || ||||||||||| |||||||| Sbjct 18790 TTCTCGGCCGAGGTGCAGATCGCCGAGGCCCGCTGTTTCTACGGTTTCCAGAT 18738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567573608320