Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03-
01] 88 sequences; 20,492,593 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq50 250 2e-61
seq4 95.1 1e-14
seq21 82.4 6e-11
>seq50
Length=15404
Score = 250 bits (276), Expect = 2e-61
Identities = 394/560 (70%), Gaps = 6/560 (1%)
Strand=Plus/Plus
Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372
||| || || | ||| || ||||| ||| || || || || ||||||||||| ||||
Sbjct 1315 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGCAAAGAA 1374
Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432
| ||||| || || |||||| ||||||| || ||||| | |||||||||||| ||
Sbjct 1375 CAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 1434
Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492
||||||||| ||||| || || |||||||||||||||| |||| || ||| ||| ||
Sbjct 1435 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCGCC 1494
Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552
|||||||||||||| ||| |||||| | || || | ||| || | || ||||| ||
Sbjct 1495 CTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 1554
Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACC 66612
| ||| || |||||| ||||| || || || || || | ||| | |||||
Sbjct 1555 GTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATCGAGAGACC 1614
Query 66613 AATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGC--CACTGTCCGGAATATGCCG 66670
|| || ||||||||||| |||||| ||| | || | | || | | |||||
Sbjct 1615 GATGCCGCCGGCCGTCTTGGAGATG--AGCGCGCACGTCTTGAGCGTGTCGTAGATGCCC 1672
Query 66671 TCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTG 66730
|| || ||||| |||| || || | |||| |||| || || || || | || |||
Sbjct 1673 TCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCGTG 1732
Query 66731 GCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTAC 66790
|||| |||||| || || | |||||||||||||| | |||||| ||||||
Sbjct 1733 CCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTAC 1792
Query 66791 GTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC-ACATCGCATCAGGAG 66849
|||||||| | ||||||| ||||| || || |||| || ||| ||||| || |
Sbjct 1793 GTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACA-CGCATGAGCAT 1851
Query 66850 GTATTGAGGCCGTTCGACCA 66869
|| || || || ||| |||
Sbjct 1852 GTGCTGCGGTCGCTCGGCCA 1871
>seq4
Length=1400164
Score = 95.1 bits (104), Expect = 1e-14
Identities = 142/202 (70%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 61700 TTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCA 61759
|||| |||||||| ||||| ||||| || || || || || |||||||| || |
Sbjct 525782 TTCGCGAGGCGGTCGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTTA 525841
Query 61760 TCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGG 61819
|||||||||| | | || |||| ||||| || || || || || ||||| || |
Sbjct 525842 TCGGCATGAACAGCGACCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTA 525901
Query 61820 TCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGA 61879
||| | || | || |||||| | | | | ||||| || || || ||||||||||
Sbjct 525902 TCGCACTCGGCAACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGA 525961
Query 61880 TTTCGCTGGATGGCAAGACGAA 61901
| ||| |||| |||||||| ||
Sbjct 525962 TCTCGATGGAGGGCAAGACCAA 525983
>seq21
Length=262679
Score = 82.4 bits (90), Expect = 6e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263
||||| | || ||||| ||||| |||||||| ||||| || ||||| || |||| |
Sbjct 18850 CATGTCCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAACTTGGTGGAGAGG 18791
Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGAT 61316
||| || |||||||| | | ||||| || ||||||||||| ||||||||
Sbjct 18790 TTCTCGGCCGAGGTGCAGATCGCCGAGGCCCGCTGTTTCTACGGTTTCCAGAT 18738
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397567573608320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |