Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600115.1_202016-03- 01] 88 sequences; 20,492,593 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq8 113 2e-19 seq7 87.8 7e-12 seq19 86.0 3e-11 seq4 86.0 3e-11 >seq8 Length=976034 Score = 113 bits (124), Expect = 2e-19 Identities = 265/394 (67%), Gaps = 16/394 (4%) Strand=Plus/Plus Query 88929 ACCTTCATCATGGCCGATGCCGAGAGCCGCGG--ACGGGCCGTGGCGCGCAAGTTCACCG 88986 |||||||||||| ||| ||| |||| | || | | ||| |||||| ||| || Sbjct 609653 ACCTTCATCATGCCCG--GCCAGGAGCTGAGGCGAAAGAACGTCCGCCGCAAGCTCAACG 609710 Query 88987 CCGTGGGCCGAGAGTGCAGGGACAAGGCCGTGGTCGTGGTGGACGACTCTGTCGTGCGCG 89046 | ||| || |||| | | |||| ||| | | || |||||||| | ||||||| Sbjct 609711 CGATGGCCCTCGAGTTCGCCGGCAAGAACGTCATGATCGTCGACGACTCGATTGTGCGCG 609770 Query 89047 GCACCACATCCAAGTTCATAATCGACCTCCTTCGCAAGTCTGGCGCCACCAAGGTCTACC 89106 | || || || ||| || |||| | | ||| || | ||||||| |||||| | Sbjct 609771 GGACAACCTCGAAGGAGATTATCGTCATGGCGCGCGAGGCGGGCGCCAAGAAGGTCATCA 609830 Query 89107 TCGCTTCTTGCTCTCCCCCGATCCGTTACCCCAACGTGTACGGCATCGACATACC--GTC 89164 | ||||||||| |||| || ||||| ||||| |||||||||||| || || || ||| Sbjct 609831 TGGCTTCTTGCGCTCCTCCCATCCGCTACCCTTGCGTGTACGGCATTGATATGCCGAGTC 609890 Query 89165 GGCCAAGGAGCTCATTGCTTCTGGTCGCACCGAGCACGAGGTGGCTCTCCTCCTCGGAGC 89224 | | | |||||| | || | ||||| ||| |||| | || | |||| || Sbjct 609891 G--CCATGAGCTCGTCGCACACGACCGCACGGAGGACGAAATCGCCGAGTACATCGGCGC 609948 Query 89225 CGACCAGGTCATCTATCAGAGTGTCGACGAC----TTGCAAGCGGCCTGTCGCCAGTTCA 89280 |||||| |||||| |||| |||||||| | | ||| ||| | |||| ||| Sbjct 609949 CGACCACATCATCTTCCAGACACTCGACGACCTCGTCTCCAGCTGCCAG-CGCC---TCA 610004 Query 89281 ATCCCTCCATCACGGCCTTTGAGGCCTCTGTCTT 89314 | ||||||||| | ||| ||| ||| ||||| Sbjct 610005 ACCCCTCCATCGAGCGCTTCGAGTGCTCCGTCTT 610038 >seq7 Length=1041051 Score = 87.8 bits (96), Expect = 7e-12 Identities = 132/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 349032 CGAGGTAGACCGACGCATTGGGCTTCTTCATCTTGGGCGTGGCGTCGAGAATCTCCTTGA 349091 |||||||||| | || ||| |||| | ||| | | ||| || |||||||||| Sbjct 820862 CGAGGTAGACGGTCGTCGACGGCGTCTTGAGGTTGACGGCGACGTTGATGATCTCCTTGA 820803 Query 349092 GTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAAGGTCTGGA 349151 | | || | || || || |||||||| | || || ||||| ||||||| || | || Sbjct 820802 GACGCGGTACACCGAGCGTGACGTTCTTTGACGACACACCGGCGTAGTGGAACGTGTTGA 820743 Query 349152 GGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTACCATCTCGC 349211 | |||| |||||| ||||| || || |||| ||||||| |||| |||||||| Sbjct 820742 GCGTCATCTGCGTCGCCGGCTCACCAATCGACTGCGCCGCGAGCGTGCCGCACATCTCGC 820683 Query 349212 CGGGCGCG 349219 | |||||| Sbjct 820682 CCGGCGCG 820675 >seq19 Length=354189 Score = 86.0 bits (94), Expect = 3e-11 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 448987 CTCGAGCAACATGGCGTAGGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTC 449046 |||||||| | || || ||||||||||| ||| | | |||||||||||||| | ||| Sbjct 165322 CTCGAGCATCTTGCCGACCGTCATGCGCGAGGGGAAACCGTGCGGGTTCATGATCACGTC 165381 Query 449047 GGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGAC 449106 ||| ||| ||||||| ||||||||||| | ||| | || ||| ||| Sbjct 165382 GGGGCAGATGCCCTGGTCGTTGAACGGCATGTCCTCCTGCGGGACGATGAGACCGCAGAC 165441 Query 449107 GCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGG 449151 |||||||| |||||||| |||||||||| || |||| || Sbjct 165442 ACCCTTCTGACCGTGGCGAGACGAGAACTTGTCTCCGAGCTCAGG 165486 >seq4 Length=1400164 Score = 86.0 bits (94), Expect = 3e-11 Identities = 174/256 (68%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 448987 CTCGAGCAACATGGCGTA-GGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGT 449045 ||||| ||| ||||| | |||||||||||| ||| ||| || ||||| ||||| | || Sbjct 59734 CTCGACCAA-ATGGCCGATGGTCATGCGCGAGGGGATGGCGTGAGGGTTGATGATCAGGT 59792 Query 449046 CGGGCGTCTCGCCGGCCGCGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGA 449105 ||||||| || | || ||| |||||||||||| || | | |||| | Sbjct 59793 CGGGCGTGATCCCCTCTGCCGAGAACGGCATGTCCTCGTGGCGGTAGGTAATGCCGATCG 59852 Query 449106 CGCCCTTCTGGCCGTGGCGGCTGCAGAACTTGTCCCCCTGCTCGGGCTTGCGTGTGAAGC 449165 |||||||| |||||||| | ||||||||| || ||||||| || || ||| Sbjct 59853 TACCCTTCTGACCGTGGCGAGAGGCGAACTTGTCACCGATCTCGGGCACACGGGTCGAGC 59912 Query 449166 GCAGCACGATCTTGATGGAGCGGAAGCCGTCCCTGTTGGTGGTGTCGATGACCGACTCCA 449225 | | |||||||| | || ||| ||| |||||| ||| || |||| || | Sbjct 59913 GGATACGGATCTTGACAAACTTGAGGCCTTCCGAGTTGGTCGTGAGGAGGACCTGGTCGA 59972 Query 449226 CGACGGCGTCGTCGGT 449241 ||| | ||| ||||| Sbjct 59973 CGAGGCCGTTCTCGGT 59988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084736792126224