Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600135.1_202016-03-
01] 78 sequences; 20,389,818 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq13 228 6e-55
seq3 113 4e-20
>seq13
Length=704413
Score = 228 bits (252), Expect = 6e-55
Identities = 387/559 (69%), Gaps = 4/559 (1%)
Strand=Plus/Minus
Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372
||| || || | ||| || ||||| ||| || || || || ||||| ||||| ||||
Sbjct 568127 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGGATCCAAAGGGCAAAGAA 568068
Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432
| ||||| || || |||||| ||||||| || ||||| | |||||||||||| ||
Sbjct 568067 CAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 568008
Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492
||||||||| ||||| || || |||||||||||||||| |||| || ||| ||| ||
Sbjct 568007 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCTCC 567948
Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552
|||||||||||||| || |||||| | || || | ||| || | || ||||| ||
Sbjct 567947 CTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 567888
Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACC 66612
| ||| || |||||| ||||| || || || || || | ||| | || ||
Sbjct 567887 GTAGCCGTTCGTGCCGGCGATGTACGAACCGGTCGCGCGGATGTTGTGGATCGAGAGGCC 567828
Query 66613 AATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGC--CACTGTCCGGAATATGCCG 66670
|| || || |||||||| |||||| ||| | || | | || | | |||||
Sbjct 567827 GATGCCGCCTGCCGTCTTGGAGATG--AGCGCGCACGTCTTGAGCGTGTCGTAGATGCCC 567770
Query 66671 TCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTG 66730
|| || ||||| |||| || || | |||| |||| || || || || | || |||
Sbjct 567769 TCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCGTG 567710
Query 66731 GCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTAC 66790
|||| |||||| || || | |||||||||||||| | |||||| ||||||
Sbjct 567709 CCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTAC 567650
Query 66791 GTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGG 66850
|||||||| | ||||||| ||||| || || |||| || ||||| || | |
Sbjct 567649 GTCTCGATCGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGAGCATG 567590
Query 66851 TATTGAGGCCGTTCGACCA 66869
| || || || ||| |||
Sbjct 567589 TGCTGCGGTCGCTCGGCCA 567571
Score = 98.7 bits (108), Expect = 8e-16
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272
|| ||||| |||||||||||||| |||||||| ||||| || |||| | ||| || |
Sbjct 257841 GCCTTCTTCGCCGCTTCGGACGGCATCGTCAACGAGAACTTGGTGGAGAGGTTCTCGGCG 257900
Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGAT 61316
|||||||| | | |||||||| ||||||||||| ||||||||
Sbjct 257901 GAGGTGCAGATTGCCGAGGCGCGCTGTTTCTACGGTTTCCAGAT 257944
Score = 86.0 bits (94), Expect = 5e-12
Identities = 132/186 (71%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 61717 ATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGA 61776
||||| |||||||| ||||| ||||| ||||||||| | |||||||||||
Sbjct 258517 ATCGAGCAGGAATTCCTGACGGACGCCTTGCCCGTCGGCTTGATCGGCATGAACGCGACC 258576
Query 61777 CTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCG-ATTTGGGTATGAA 61835
|| ||| ||||| || || || || || ||||| || | |||| ||||| | | |
Sbjct 258577 CTCATGCGACAGTACATCGAGTTCGTCGCGGACCGATTGCTTGTCGCGCTTGGGAACG-A 258635
Query 61836 GCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAA 61895
| | | || ||| | | ||||| || || || ||||| ||||| ||| |||| |||||
Sbjct 258636 GAAGCTGTACAATGCCGAGAACCCGTTCGACTTTATGGAGATGATCTCGATGGAGGGCAA 258695
Query 61896 GACGAA 61901
||| ||
Sbjct 258696 GACCAA 258701
>seq3
Length=1525690
Score = 113 bits (124), Expect = 4e-20
Identities = 147/201 (73%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761
|| |||||||| ||||| || || || || || || || |||||||| ||||||
Sbjct 1123852 CGCGAGGCGGTCGAGATCGAGCAAGAGTTCCTCACGGAGGCGCTGCCCGTCAAGCTCATC 1123793
Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821
|||||||| | | || |||| ||||| || || |||||||||||||| || | |||
Sbjct 1123792 GGCATGAACAGCGACCTCATGTGCCAGTACATCGAGTTTGTTGCCGACCGCTTGCTTGTC 1123733
Query 61822 G-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGAT 61880
| | |||| | | || |||||| | | | | ||||| || || |||||||| |||||
Sbjct 1123732 GCACTTGGCAACG-AGAAGATCTACCACAAGGAGAACCCGTTCGACTTCATGGAGATGAT 1123674
Query 61881 TTCGCTGGATGGCAAGACGAA 61901
||| |||| |||||||| ||
Sbjct 1123673 CTCGATGGAGGGCAAGACCAA 1123653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397567622061920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |