Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600155.1_202016-03-
01] 53 sequences; 20,270,281 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq25 250 2e-61
seq5 91.5 1e-13
seq21 82.4 6e-11
>seq25
Length=115453
Score = 250 bits (276), Expect = 2e-61
Identities = 394/560 (70%), Gaps = 6/560 (1%)
Strand=Plus/Minus
Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372
||| || || | ||| || ||||| ||| || || || || ||||||||||| ||||
Sbjct 3552 CCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCAGAGGGCAAAGAA 3493
Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432
| ||||| || || |||||| ||||||| || ||||| | |||||||||||| ||
Sbjct 3492 CAAGTCGCGCGCGCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAA 3433
Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492
||||||||| ||||| || || |||||||||||||||| |||| || ||| ||| ||
Sbjct 3432 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCCGGGCGCTTGTTGCCGCC 3373
Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552
|||||||||||||| ||| |||||| | || || | ||| || | || ||||| ||
Sbjct 3372 CTGGTCGACGTAGCGCGCGGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCGTTCGA 3313
Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACC 66612
| ||| || |||||| ||||| || || || || || | ||| | |||||
Sbjct 3312 GTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATGTTGTGGATCGAGAGACC 3253
Query 66613 AATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGC--CACTGTCCGGAATATGCCG 66670
|| || ||||||||||| |||||| ||| | || | | || | | |||||
Sbjct 3252 GATGCCGCCGGCCGTCTTGGAGATG--AGCGCGCACGTCTTGAGCGTGTCGTAGATGCCC 3195
Query 66671 TCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTG 66730
|| || ||||| |||| || || | |||| |||| || || || || | || |||
Sbjct 3194 TCGATCGAGTCGTCCTTCATCGTGACGAGGAAGCACGACGAGAGCTGCGGGTGCGGCGTG 3135
Query 66731 GCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTAC 66790
|||| |||||| || || | |||||||||||||| | |||||| ||||||
Sbjct 3134 CCGGCGTTGAAGAGCGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACATGAGGTTGTAC 3075
Query 66791 GTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC-ACATCGCATCAGGAG 66849
|||||||| | ||||||| ||||| || || |||| || ||| ||||| || |
Sbjct 3074 GTCTCGATCGCGCGCTCAATGTCGTCGCCGTGGATGCCGACCGCGACA-CGCATGAGCAT 3016
Query 66850 GTATTGAGGCCGTTCGACCA 66869
|| || || || ||| |||
Sbjct 3015 GTGCTGCGGTCGCTCGGCCA 2996
>seq5
Length=1227376
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/200 (70%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 61702 CGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATC 61761
|| |||||||| ||||| ||||| || || || || || | |||||| ||||||
Sbjct 777675 CGCGAGGCGGTCGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTCCCCGTCAAGCTCATC 777616
Query 61762 GGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTC 61821
|||||||| | | || |||| ||||| || || || || || ||||| || | ||
Sbjct 777615 GGCATGAACAGCGATCTCATGTGCCAGTACATCGAGTTCGTGGCAGACCGATTGCTTATC 777556
Query 61822 GATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATT 61881
| | || | || |||||| | | | | ||||| || || || |||||||||||
Sbjct 777555 GCGCTCGGCAACGAGAAGATCTACCACAAGGAGAACCCGTTCGACTTTATGGACATGATC 777496
Query 61882 TCGCTGGATGGCAAGACGAA 61901
||| |||| |||||||| ||
Sbjct 777495 TCGATGGAGGGCAAGACCAA 777476
>seq21
Length=276254
Score = 82.4 bits (90), Expect = 6e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263
||||| | || ||||| ||||| |||||||| ||||| || ||||| || |||| |
Sbjct 32943 CATGTCCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAACTTGGTGGAGAGG 32884
Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGAT 61316
||| || |||||||| | | ||||| || ||||||||||| ||||||||
Sbjct 32883 TTCTCGGCCGAGGTGCAGATCGCCGAGGCCCGCTGTTTCTACGGTTTCCAGAT 32831
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397567743195920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |