Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03-
01] 38 sequences; 20,321,374 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq23 241 1e-58
seq4 113 4e-20
seq15 93.3 3e-14
>seq23
Length=148841
Score = 241 bits (266), Expect = 1e-58
Identities = 534/799 (67%), Gaps = 4/799 (1%)
Strand=Plus/Plus
Query 66128 GCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGC 66187
|| |||||||| | |||| | || |||| ||||| || |||| ||| | || ||||| |
Sbjct 121324 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTAC 121383
Query 66188 CAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAG 66247
|| || |||| ||| || || || | ||| | ||||| | ||| ||
Sbjct 121384 CAGAGCTTCTGTGCGGGCACGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTCTCGAAG 121443
Query 66248 AGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATC 66307
|| | | ||| ||||| | || ||| || | || || | || || |
Sbjct 121444 AGCTCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGCCTCGGCAGGGCAGAAG 121503
Query 66308 AGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCG 66367
|| | ||| || || | ||| || ||||| ||| || || || || ||||| || ||
Sbjct 121504 AGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGCA 121563
Query 66368 TAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAAC 66427
|||| | ||||| || || |||||| ||||||| || ||||| | ||||||||||
Sbjct 121564 AAGAACAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAC 121623
Query 66428 TCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCG 66487
|| || |||||||| ||||| || || |||||||||||||||| ||| || ||| |
Sbjct 121624 TCGAAAATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTTG 121683
Query 66488 CCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCG 66547
|| || |||||||||||||| || |||||| | || || | ||| || | || |||
Sbjct 121684 CCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCG 121743
Query 66548 TTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTC 66607
|| || | ||| || |||||| ||||| || || || || |||| ||| |
Sbjct 121744 TTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATATTGTGGATCGAG 121803
Query 66608 AGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGC--CACTGTCCGGAATA 66665
||||| || || || || ||||| |||||| ||| || || | | || | | |
Sbjct 121804 AGACCGATGCCGCCTGCAGTCTTGGAGATG--AGCGCACACGTCTTGAGCGTGTCGTAGA 121861
Query 66666 TGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGG 66725
|||| || || ||||| |||| || || | |||| |||| || || || || | |
Sbjct 121862 TGCCCTCGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGGGTGCG 121921
Query 66726 GTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAAT 66785
| ||| |||| |||||| || || | |||||||||||||| | |||||| ||
Sbjct 121922 GCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGAT 121981
Query 66786 TGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCA 66845
|||||||||||||| | ||||||| ||||| || || |||| || ||||| |
Sbjct 121982 TGTACGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 122041
Query 66846 GGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCA 66905
| | || || || || ||| ||| | | | || | | || ||| || || || |
Sbjct 122042 GCATGTGCTGCGGTCGCTCGGCCACCTTGCCGTCGAGGCGGAGTAGGTACGACCGCTCGA 122101
Query 66906 GGGTCTTGATACCAAAGTA 66924
| ||||||| || |||||
Sbjct 122102 GCGTCTTGAAGCCGAAGTA 122120
>seq4
Length=1405664
Score = 113 bits (124), Expect = 4e-20
Identities = 146/202 (72%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 61700 TTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCA 61759
|||| |||||||| ||||| ||||| || || || || || |||||||| ||||
Sbjct 862192 TTCGCGAGGCGGTCGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTCA 862133
Query 61760 TCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGG 61819
|||||||||| | | || |||| ||||| || || || ||||||||||| || |||
Sbjct 862132 TCGGCATGAACAGCGACCTCATGTGCCAGTACATCGAGTTCGTTGCCGACCGCTTGCTGG 862073
Query 61820 TCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGA 61879
| | | || | || |||||| | | | | ||||| || ||||| ||||| ||||
Sbjct 862072 TTGCGCTCGGCAACGAGAAGATCTACCACAAGGAGAACCCGTTCGATTTTATGGAGATGA 862013
Query 61880 TTTCGCTGGATGGCAAGACGAA 61901
| ||| |||| |||||||| ||
Sbjct 862012 TCTCGATGGAGGGCAAGACCAA 861991
>seq15
Length=541629
Score = 93.3 bits (102), Expect = 3e-14
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272
|| ||||| |||||||||||||| |||||||| ||||| | |||| | ||| || |
Sbjct 263676 GCCTTCTTCGCCGCTTCGGACGGCATCGTCAACGAGAACCTGGTGGAGAGGTTCTCGGCG 263617
Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGAT 61316
|||||||| | | |||||||| ||||||||||| ||||||||
Sbjct 263616 GAGGTGCAGATCGCCGAGGCGCGCTGTTTCTACGGTTTCCAGAT 263573
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397567815876320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |