Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rhodotorula_20toruloides_20[genbank_20GCA_5F001600215.1_202016-03- 01] 38 sequences; 20,321,374 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq23 241 1e-58 seq4 113 4e-20 seq15 93.3 3e-14 >seq23 Length=148841 Score = 241 bits (266), Expect = 1e-58 Identities = 534/799 (67%), Gaps = 4/799 (1%) Strand=Plus/Plus Query 66128 GCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGC 66187 || |||||||| | |||| | || |||| ||||| || |||| ||| | || ||||| | Sbjct 121324 GCGTCCTTGTAGAGCATGAAGGGGTTGCCCGTCTCGACCTGGGCCTCGAGGACGGCGTAC 121383 Query 66188 CAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAG 66247 || || |||| ||| || || || | ||| | ||||| | ||| || Sbjct 121384 CAGAGCTTCTGTGCGGGCACGGTGCGCTTGGCGCGACCCTCCTTCTCGTACTTCTCGAAG 121443 Query 66248 AGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATC 66307 || | | ||| ||||| | || ||| || | || || | || || | Sbjct 121444 AGCTCCTTGAACTCGTCACCGTAGACCTCGTGGAGTCCGGGCGCCTCGGCAGGGCAGAAG 121503 Query 66308 AGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCG 66367 || | ||| || || | ||| || ||||| ||| || || || || ||||| || || Sbjct 121504 AGGGGCCAGTCGCCGTTCTGCTCGACACGCTCCATGAAGAGGTCGGGAATCCACAGCGCA 121563 Query 66368 TAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAAC 66427 |||| | ||||| || || |||||| ||||||| || ||||| | |||||||||| Sbjct 121564 AAGAACAAGTCGCGCGCACGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAC 121623 Query 66428 TCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCG 66487 || || |||||||| ||||| || || |||||||||||||||| ||| || ||| | Sbjct 121624 TCGAAAATGTCGGCGTGCCACGGCTCGAGGTAGATGGCGAACGCGCCAGGGCGCTTGTTG 121683 Query 66488 CCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCG 66547 || || |||||||||||||| || |||||| | || || | ||| || | || ||| Sbjct 121684 CCTCCCTGGTCGACGTAGCGCGCCGTGTTGTTGTACACGCGGAGCATGGGGATGATGCCG 121743 Query 66548 TTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTC 66607 || || | ||| || |||||| ||||| || || || || |||| ||| | Sbjct 121744 TTCGAGTAGCCGTTCGTGCCGGCGATGTACGAGCCGGTCGCGCGGATATTGTGGATCGAG 121803 Query 66608 AGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGC--CACTGTCCGGAATA 66665 ||||| || || || || ||||| |||||| ||| || || | | || | | | Sbjct 121804 AGACCGATGCCGCCTGCAGTCTTGGAGATG--AGCGCACACGTCTTGAGCGTGTCGTAGA 121861 Query 66666 TGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGG 66725 |||| || || ||||| |||| || || | |||| |||| || || || || | | Sbjct 121862 TGCCCTCGATCGAGTCGTCCTTCATCGTAACGAGGAAGCACGACGAGAGCTGCGGGTGCG 121921 Query 66726 GTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAAT 66785 | ||| |||| |||||| || || | |||||||||||||| | |||||| || Sbjct 121922 GCGTGCCGGCGTTGAAGAGCGTCGGCGACGCGTGCGTAAAGTACCGCTCCGACATGAGAT 121981 Query 66786 TGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCA 66845 |||||||||||||| | ||||||| ||||| || || |||| || ||||| | Sbjct 121982 TGTACGTCTCGATGGCGCGGTCAATGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 122041 Query 66846 GGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCA 66905 | | || || || || ||| ||| | | | || | | || ||| || || || | Sbjct 122042 GCATGTGCTGCGGTCGCTCGGCCACCTTGCCGTCGAGGCGGAGTAGGTACGACCGCTCGA 122101 Query 66906 GGGTCTTGATACCAAAGTA 66924 | ||||||| || ||||| Sbjct 122102 GCGTCTTGAAGCCGAAGTA 122120 >seq4 Length=1405664 Score = 113 bits (124), Expect = 4e-20 Identities = 146/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 61700 TTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCA 61759 |||| |||||||| ||||| ||||| || || || || || |||||||| |||| Sbjct 862192 TTCGCGAGGCGGTCGAGATCGAGCAGGAGTTCCTCACCGAGGCGCTGCCCGTCAAGCTCA 862133 Query 61760 TCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGG 61819 |||||||||| | | || |||| ||||| || || || ||||||||||| || ||| Sbjct 862132 TCGGCATGAACAGCGACCTCATGTGCCAGTACATCGAGTTCGTTGCCGACCGCTTGCTGG 862073 Query 61820 TCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGA 61879 | | | || | || |||||| | | | | ||||| || ||||| ||||| |||| Sbjct 862072 TTGCGCTCGGCAACGAGAAGATCTACCACAAGGAGAACCCGTTCGATTTTATGGAGATGA 862013 Query 61880 TTTCGCTGGATGGCAAGACGAA 61901 | ||| |||| |||||||| || Sbjct 862012 TCTCGATGGAGGGCAAGACCAA 861991 >seq15 Length=541629 Score = 93.3 bits (102), Expect = 3e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || ||||| |||||||||||||| |||||||| ||||| | |||| | ||| || | Sbjct 263676 GCCTTCTTCGCCGCTTCGGACGGCATCGTCAACGAGAACCTGGTGGAGAGGTTCTCGGCG 263617 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGAT 61316 |||||||| | | |||||||| ||||||||||| |||||||| Sbjct 263616 GAGGTGCAGATCGCCGAGGCGCGCTGTTTCTACGGTTTCCAGAT 263573 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567815876320