Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Schizopora_20paradoxa_20[genbank_20GCA_5F001020605.1_202015-06-05] 1,291 sequences; 44,406,206 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq57 125 6e-24 seq3 122 7e-23 seq277 105 5e-18 seq1111 91.5 1e-13 >seq57 Length=175691 Score = 125 bits (138), Expect = 6e-24 Identities = 169/234 (72%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 66344 AATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCG 66403 || || ||||| ||||| || |||||||| ||||| || || || || || | || Sbjct 69366 AAAAGGTCAGGGATCCATAGCGCGTAGAAAAGATCTCGAGCGCGAGCTTCTTCTTTTCCA 69307 Query 66404 TGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATG 66463 || || || || | ||| |||||||| |||| |||||| |||||||| |||| |||||| Sbjct 69306 TGGTTCTTACGAAGGTCAAGGAACTCGAAGACGTCGGCGTGCCATGGCTCCATGTAGATT 69247 Query 66464 GCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCG---ACATTGTTG 66520 ||||| | || ||| || ||||||||||||||||| |||||| ||| || Sbjct 69246 GCGAAAGCTCCTGGACGCTTATTACCACCTTGGTCGACGTAACGAGCGGTCGCATCGT-- 69189 Query 66521 AAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATG 66574 || | || | |||||| || | ||||| || | |||||||| || ||||| Sbjct 69188 -AGGCTCGAAGCATCGGCACAATGCCGTTTGAATAACCATTGGTCCCTGCGATG 69136 Score = 123 bits (136), Expect = 2e-23 Identities = 198/281 (70%), Gaps = 24/281 (9%) Strand=Plus/Minus Query 65802 GGACA--AAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATT 65859 ||||| || |||||||| | || || | ||||||||||||||||| ||||||| || Sbjct 70000 GGACATGAAGGTGTCGGCTAATCCCTGGATGCCAATACCGATGGGACGGTGACGCATGTT 69941 Query 65860 GGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCG 65919 |||||| | ||||||||||| |||||||| |||| ||||||| |||||| | ||| Sbjct 69940 TGAACGTTTAGCCTCAGGTACTGGGTAGTAGTTGACGTCGATAACGCGATTGAGGTTGAA 69881 Query 65920 TGTCACCACATGCACGATACGTC--GCAATTGTTCGAAATCAAAATGTTTAGGACGATCG 65977 || | || | | ||||| | | || | ||| ||| | | || | | || Sbjct 69880 TGCTATGACCT--TGGTGACGTCGTGGAGTTTCTGGAAGTCATACTCCTT--GCC--TC- 69828 Query 65978 GGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATC 66037 || || ||| ||||||||| ||||| |||||||||||||||||| || Sbjct 69827 -GAATGAAGGA------------GGGAAGGGCTAGAGACGCGAGGTTGCAGACAGCTGTC 69781 Query 66038 TCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATT 66078 ||||| ||||| | ||||||| || |||||||| | ||| Sbjct 69780 TCGTCGGGAGCCGAGTACTCGATGATCTCGGTGCATAAATT 69740 >seq3 Length=549351 Score = 122 bits (134), Expect = 7e-23 Identities = 378/595 (64%), Gaps = 59/595 (10%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| ||||| |||||||| |||||||| | |||||| | ||| | Sbjct 261981 ATTTGGCAAATGTACAAGAAGGCTGAAGCTTCGTTCTGGACTGCCGAGGAGATGGATCTT 261922 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| | | |||||| || ||| | ||| | || | || ||| | | Sbjct 261921 TCCAAGGACCTCCACGACTGGCAGAACAAGTTAAACGA-CAACGAGCGCCACTTCGTCAG 261863 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 ||||| | |||||||| || || || ||||||||||| || ||||| | | || || Sbjct 261862 CCATGTTCTTGCGTTCTTCGCTGCGTCCGACGGTATCGTAAACGAGAACCTTGTTGAGCG 261803 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATT----- 61317 ||| | || || |||| ||||||| || || ||||| || ||||| ||| Sbjct 261802 ATTCAGCAACGAAGTTCAAGCTGCGGAGGCTCGGTGCTTCTATGGATTCCAAATTATGAT 261743 Query 61318 -----------------------------GC----------------CATGGAGAATGTC 61332 || || |||||| || Sbjct 261742 GTAAGTTTCGTTTCACTCACCTTTATTCAGCTTCTTACGGGGGTTTACAGGGAGAACATC 261683 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGTGAA 61392 ||||| |||| ||| | |||||||| || ||||||| ||| | || |||| ||| Sbjct 261682 CACTCCGAGACGTATTCGCTCCTCATCGACACATACATCAAGGACCCCGCTCAACGCGAA 261623 Query 61393 CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTC 61452 | ||| | ||| | ||||| || || || ||| ||| || || ||||| || Sbjct 261622 TACCTTTTCGACGCCGTTGAGACAATTCCTTGCGTTAAGAAGAAGGCCGACTGGGCTCTC 261563 Query 61453 AATTGGATCACCAGTACAACGGCTA--CATTTGGTGAACGATTGCTGGCATTTGCGGTGG 61510 | |||||| | | |||| ||| | || | || || | | || ||||| | | Sbjct 261562 CACTGGATCTC--GGACAAGCGCTCATCCTTCGCCGAGCGTCTCATCGCGTTTGCCGCCG 261505 Query 61511 TCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGAC 61570 |||| || | || ||| |||||| || || || ||||| ||| | ||||| || || | Sbjct 261504 TCGAAGGCATTTTCTTCTCTGGATCCTTCGCTGCCATCTTCTGGCTCAAGAAGCGAGGGC 261445 Query 61571 TTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCA 61625 | ||||| || || || |||||||| ||| | || || |||||||||||||| Sbjct 261444 TCATGCCTGGCCTCACTTTCAGCAACGAGCTCATCAGCCGTGACGAGGGCATGCA 261390 >seq277 Length=43962 Score = 105 bits (116), Expect = 5e-18 Identities = 163/227 (72%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| ||||| ||||| || |||||||| | ||| || || ||| | |||||||| Sbjct 18003 ATGTACAAGAAGGCCGAAGCGTCTTTCTGGACAGCGGAAGAAGTGGATCTTTCCAAAGAT 18062 Query 61156 ATGAATGACTGGGAGCGTTTA-TCGAGCGGTGAACAACAT---TTCATTAAACATGTGTT 61211 ||| ||| ||| | | | | ||||| ||| ||| | ||||| | || || | Sbjct 18063 ATGGGTGATTGGC-GTGACAAGTTGAGCGATGACGAACGTCACTTCATCAGCCACGTCCT 18121 Query 61212 GGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCA 61271 |||||||||||||| ||||| || || ||||| ||||| || | || | ||| ||| Sbjct 18122 CGCGTTCTTTGCCGCATCGGATGGCATAGTCAACGAGAACTTGGTCGAGAGATTC-AGCA 18180 Query 61272 G-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATT 61317 | ||||| ||||| | || || || || || ||||| || || ||| Sbjct 18181 GCGAGGTTCAAGTTGCTGAAGCTCGATGCTTTTACGGGTTTCAAATT 18227 >seq1111 Length=1418 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/235 (69%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || ||| ||||||||| || || || || ||||||||| | ||| ||| | ||| | Sbjct 988 ATATGGAACATGTACAAGAAAGCAGAGGCAAGCTTCTGGACAGCGGAAGAGATGGATCTT 929 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAAC---ATTTCATTAAA 61203 || || || ||| || ||| ||| | | | || | || ||| ||||||| || Sbjct 928 TCGAAGGATATGGCGGATTGGCAGCATAAACTCAACGATCAAGAACGTCATTTCATCAAG 869 Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 || || | || || || | || || ||||| || || ||||||||| | | || | Sbjct 868 CACGTTCTCGCTTTTTTCGTTGCATCCGACGGGATAGTGAATGAGAATCTTGTCGAGAGG 809 Query 61264 TTCGCGCAG-GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATT 61317 ||| | || |||||||| | | || || |||||||||||||||||||||||| Sbjct 808 TTCT-GTAGCGAGGTGCAGATCGCAGAAGCACGTTGTTTCTACGGCTTCCAGATT 755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397561744640240