Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Sporisorium_20iseilematis- ciliati_20[genbank_20GCA_5F001748505.1_202016-09-28] 15,412 sequences; 23,207,148 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq104 93.3 2e-13 seq25 87.8 7e-12 >seq104 Length=61609 Score = 93.3 bits (102), Expect = 2e-13 Identities = 259/392 (66%), Gaps = 24/392 (6%) Strand=Plus/Minus Query 88811 CGTGATCGCCGTGCCGGAGACGGCGCGGATCGCGGCGGGCCAAGTGGCCTACGAGCTCGG 88870 ||| ||| |||| || || || |||| |||| ||| |||| | ||| | | ||||| Sbjct 22847 CGTCATCCCCGTCCCAGATACATCGCGTGTCGCCGCGCTCCAACTCGCCCAGAACCTCGG 22788 Query 88871 CCTGCCTCTGCGCGAGGGCCTGCTCAGGAACCGGTACCAGACAAGCACTCTGGCCAGGAC 88930 | | || ||||| ||| | ||| |||||| ||| || | | | || Sbjct 22787 CGTTCCATACCGCGAAGGCTTCATCAAGAACCGCTACG----------TCGGTC--GTAC 22740 Query 88931 CTTCATCATGGCCGATGCCGAGAGC----CGCG-GACGGGCCGTGGCGCGCAAGTTCACC 88985 |||||||||| ||| | | ||| | ||| || | |||| |||||| ||| | Sbjct 22739 CTTCATCATGCCCGGT-CAGAGCGTTCGTCGCAAGAACGTCCGT----CGCAAGCTCAAC 22685 Query 88986 GCCGTGGGCCGAGAGTGCAGGGACAAGGCCGTGGTCGTGGTGGACGACTCTGTCGTGCGC 89045 ||| ||| | || | ||| | ||| ||| || | || |||||||| |||| ||| Sbjct 22684 GCCATGGCGCTCGAATTCAGCGGTAAGAACGTCCTCATCGTCGACGACTCCATCGTCCGC 22625 Query 89046 GGCACCACATCCAAGTTCATAATCGACCTCCTTCGCAAGTCTGGCGCCACCAAGGTCTAC 89105 ||||| || || || || ||| | | ||| | | ||||||| |||||| | Sbjct 22624 GGCACGACCTCGAAAGAGATCATCCAGATGGCTCGTGACGCAGGCGCCAAAAAGGTCATC 22565 Query 89106 CTCGCTTCTTGCTCTCCCCCGATCCGTTACCCCAACGTGTACGGCATCGACATACCGTCG 89165 | ||||| ||| | || || ||||| ||| | ||||| |||||||||||||| || ||| Sbjct 22564 ATGGCTTCCTGCGCCCCGCCTATCCGCTACTCGAACGTCTACGGCATCGACATGCCTTCG 22505 Query 89166 -GCCAAGGAGCTCATTGCTTCTGGTCGCACCG 89196 ||||| || ||| | || | || ||| ||| Sbjct 22504 CGCCAA-GAACTCGTCGCGTACGGCCGCTCCG 22474 >seq25 Length=198755 Score = 87.8 bits (96), Expect = 7e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 449006 GTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGCG 449065 ||||||||||| ||| || | ||||| |||||||||||||| || | ||| || Sbjct 170339 GTCATGCGCGAGGGGAAGCCGTGCGGATTCATGATGATGTCCGGGTTGATGCCCTGGTCG 170280 Query 449066 TTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCGG 449125 |||| ||||| || || | | ||| | ||| ||| ||||||||||||||||| || Sbjct 170279 GTGAACGGCATATCTTCCTGCTGGACGATCAGTCCGACCACGCCCTTCTGGCCGTGACGC 170220 Query 449126 CTGCAGAACTTGTCCCCCTGCTCGGG 449151 | |||||||||| || |||| || Sbjct 170219 GAGGAGAACTTGTCGCCGAGCTCCGG 170194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084317493742776