Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Termitomyces_20sp._20JCM_2013351_20[genbank_20GCA_5F001972325.1_2020 16-12-09] 1,752 sequences; 91,816,091 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq372 343 2e-92 seq497 297 3e-78 seq3 232 1e-58 seq38 122 1e-25 >seq372 Length=16318 Score = 343 bits (380), Expect = 2e-92 Identities = 231/257 (90%), Gaps = 1/257 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 8019 ACTCGCTGGCTCTGTCATTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 8078 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||||| |||||| || | ||||||||||||||||| || Sbjct 8079 CCTGTTATTGCCTCAAACTTCCATCAGCTGGATGCTGACAGTCCCTCTAAGAAGCC-GCG 8137 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 || | || | ||||||||||||||||||||||||||||||||||||||||| Sbjct 8138 ACTAGTATGAGCCAGCCTAGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 8197 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 8198 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAAAATCATGAA 8257 Query 242 AGAGCTATCAATCTGTC 258 ||||||||||||||||| Sbjct 8258 AGAGCTATCAATCTGTC 8274 >seq497 Length=27384 Score = 297 bits (328), Expect = 3e-78 Identities = 199/221 (90%), Gaps = 1/221 (0%) Strand=Plus/Minus Query 38 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCC 97 |||||||||||||||||||||||||||||||||||||||||||||||| |||||| || Sbjct 27384 CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATCAGCTGGATGCT 27325 Query 98 AATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAA 157 | ||||||||||||||||| || || | | || | ||||||||||||||||| Sbjct 27324 GACAGTCCCTCTAAGAAGCC-GCGACTAGCATGAGCCAGCCTAGCTATTTAGCAGGTTAA 27266 Query 158 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 27265 GGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATG 27206 Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||| ||||| |||||||||||||||||||| Sbjct 27205 CACCACCACCCATAAAATCATGAAAGAGCTATCAATCTGTC 27165 >seq3 Length=1746238 Score = 232 bits (256), Expect = 1e-58 Identities = 202/251 (80%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 8 TGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTT 67 |||||| |||| ||||| || ||| ||||| ||| ||||||| |||||||| Sbjct 1146371 TGGCTCTGTCATTGTAGTGCATATGCAGCCCA--------AAGAGCATCACTGACCTGTT 1146422 Query 68 ATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC 127 ||||||||||||||| || |||| | || | |||||||||||||||| || |||| | Sbjct 1146423 ATTGCCTCAAACTTCAATCAGCTGAATGCTGACAGTCCCTCTAAGAAGCT-GCAACCAGC 1146481 Query 128 CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 ||| | ||||||||||||||||||||||| ||| |||| |||||||||||||| Sbjct 1146482 ATTAGCCAGCCTGGCTATTTAGCAGGTTAAGGTCTTATTCATTATTGGAATTAACCAGAC 1146541 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||| ||| ||| ||||||||| |||||||||||| |||||||| ||||| ||||||||| Sbjct 1146542 AAATTACTTCACTAACTAAGAATGGCCATGCACCAACACCCATAAAATCATGAAAGAGCT 1146601 Query 248 ATCAATCTGTC 258 |||||||||| Sbjct 1146602 TTCAATCTGTC 1146612 >seq38 Length=508478 Score = 122 bits (134), Expect = 1e-25 Identities = 98/118 (83%), Gaps = 8/118 (7%) Strand=Plus/Plus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||||||||||||||||| ||| |||| |||||||| ||||||||||||||| Sbjct 183573 GCTATTTAGCAGGTTAAGATCT-------TATCAGAATTAACTGAACAAATCACTCCACC 183625 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||||||||||||||| |||| ||||| || ||||||||||||||||| Sbjct 183626 CT-TAAGAATGGCCATGCACCACCACTCATAAAATCATGAGAGAGCTATCAATCTGTC 183682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796786476312