Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2100 540 4e-151 >seq2100 Length=9021 Score = 540 bits (598), Expect = 4e-151 Identities = 532/681 (78%), Gaps = 41/681 (6%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||||||||||||||||||| ||||||| |||||||| | ||||||||||||| Sbjct 4559 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAAT 4618 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| |||||||||||||| ||||||| |||| ||||||||||||||||||||||| Sbjct 4619 ATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAA 4678 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCG 219 ||||||||||| || |||||||||||| ||||||||||||||| |||| ||| | Sbjct 4679 AGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCGCTTGAGGTTAGACATGCATG 4738 Query 220 CAGTTGCTCAACCGGCCCCTCGGCC--GGTGCACTCTTCTGCGGT-CAGGCCAGCATCAG 276 |||| |||||| | | || || | | | | ||| || |||||||||||| | Sbjct 4739 CAGTAT-TCAACCTTTCTTTTGGGATTGGCGTATT-TGCTGTTGTGCAGGCCAGCATCGG 4796 Query 277 CTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCC-C 335 | | | | |||||| | | |||||||| | ||||| | |||||||| | | Sbjct 4797 TTTTGTCTGCTGGATAATAGTAGGAGAAATGTGGCATC-TTCGGATG-TGTTATAGTCTC 4854 Query 336 GGGGTGGA--------ATGCGGCCC--GCCTGGACTGAG------GTCCGCGCTCCGGC- 378 | |||| ||| | || | | | | || | | | || || ||| Sbjct 4855 GTATTGGATACAGTGGATGGGACCGAGGACCGCAGTGTGCCGTAAGGCGGCTCTTCGGAG 4914 Query 379 -----------TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACC 427 ||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 4915 ACCTTCGCACTTAGGATGCTGGCGTAATGGCCTTAAGCGGCCCGTCTTGAAACACGGACC 4974 Query 428 AAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGA 487 |||||||||||||| | ||||||| |||||||| ||||||| | ||||||||||||||| Sbjct 4975 AAGGAGTCTAACATATTTGCGAGTCTTTGGGTGGCAAACCCATAGGCGTAATGAAAGTGA 5034 Query 488 ACGGAGGTGGGAACCCG-----TGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGAT 542 | | |||||||| || || |||||||||||||||||||| || | | |||| Sbjct 5035 ATGCAGGTGGGATCCTTCTTTATGGAGGTGCACCATCGACCGATCCGGAATTTCTAGGAT 5094 Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602 ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 5095 GGATTTGAGTACGAGCACATATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 5154 Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662 | |||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||| Sbjct 5155 GCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGT 5214 Query 663 CAAATTTGGGTATAGGGGCGA 683 ||||||||||||||||||||| Sbjct 5215 CAAATTTGGGTATAGGGGCGA 5235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079938052400