Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20caries_20[genbank_20GCA_5F001645005.1_202016-05-16] 2,888 sequences; 29,540,861 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2399 358 5e-94 seq2181 241 1e-58 >seq2399 Length=11591 Score = 358 bits (396), Expect = 5e-94 Identities = 1218/1864 (65%), Gaps = 44/1864 (2%) Strand=Plus/Minus Query 65080 GACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTT 65139 ||||||||||||||||||||| || || | | ||||| || |||||| | || ||||| Sbjct 5028 GACCGTGAACTGGATCGCATTGGCCGCAGGCCGGGTCCGGAGGTAGTACGTCCCCGTCTT 4969 Query 65140 GAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAAT-TCGGCTCGG 65198 | || ||| ||||||| ||||| | || ||| || || || ||||| | Sbjct 4968 CAACCCCTTCTTCCAGCCATAGAAGTGCAT-GCTGGTAAGTTGGCCAAAGCTCGGCGCTT 4910 Query 65199 CCACATGCATATTCAACGACT--GACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 || ||| || |||| |||| | ||| |||| || || || || || ||||| Sbjct 4909 GCAGATGGATGTTCA--GACTTTGGGACTGGCAGATGAAAGCGCCCCGGTCCGCGGCCAT 4852 Query 65257 GTCAATGATACGACGTCC--CGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCA 65314 ||||||||| ||| | | ||| ||||||||||| ||||||||||| || | | | Sbjct 4851 GTCAATGAT--GACCTTCTGCGAGATCTCCCAGACCGTCTTGTACAG-CGCCTTGATCCG 4795 Query 65315 ATT-GGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCAT 65373 | || ||| | | | ||| | || || | | | || || || || || ||| Sbjct 4794 GTCCGGGATCCCGGGCACATTCTGAATCGAGCCGCCATGCGCTATGATCCGGTTCTTCAT 4735 Query 65374 CGACTCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGA-TTGATGACTT 65432 | ||| ||||| || |||| || | | | || | ||| |||| ||||| Sbjct 4734 CTGCTCGTTCCACAGCCCTTGCTCGACGAGCTCGCGGAGCA-GCCACGGGTTGACGACTT 4676 Query 65433 GGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATT 65492 |||||||||| | ||| ||||| ||| || | |||| |||| || |||||| | | Sbjct 4675 GGAACTCGCCAGCCAGCACACGGCGGGTGTACAGGTTGCTCGTGTAAGGCTCAAAGCACT 4616 Query 65493 CAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGT 65552 | || ||| || || || || || || || ||||| || |||| ||||| |||| Sbjct 4615 CGTTGAAGCCCAGGATCTGACTCGTCGAGGCCGTCGGCATAGGTGCGAGCAACAGCGAGT 4556 Query 65553 TTCGCAATCCGTTCATTTCAATGTTGTGACGCAATTCGTCCCAGTTCCACATCGGTTTAT 65612 | || | |||| | |||||||| | | || |||||| ||| | | Sbjct 4555 TCCGGAGACCGTGCGAGGCAATGTTGCGCTTGATCTCAGCCCAGTCCCAAAG------AC 4502 Query 65613 CGTCGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGGCCGGTGAACCGA 65672 || | ||| |||||| || | || || || | |||||||| | || Sbjct 4501 CGCTGGGGGTAACGCACCACATGTCGTACTGGAGCTCGCCCTTGCTGGCCGGGCAGCCCT 4442 Query 65673 GGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA-GCTGGTCTCGAGTGCGGCA 65731 | | | ||||| || |||||||||||| | || | | | ||| || ||||| Sbjct 4441 CGTATGTCTCGTAGGTCCCGAGCTCCTTGGCAAGCTCGCACGATCG-CTCAAGAGCGGCG 4383 Query 65732 AAATAAATGGTCTCGAAAATGCGTCGATTAAG-TTCACGTGCCTCATCGCTCTCGTACGG 65790 || ||||||||||| || | || || ||| | ||||| || || | || Sbjct 4382 TGGTAGATGGTCTCGAAGATCTGAATGTTGAGCTTCTTG-GCCTCGGGACTGTCAAA-GG 4325 Query 65791 CATA-CCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGAT 65849 | || ||||| | | || | ||| || ||||| | ||||| || |||||||| || | Sbjct 4324 CGTAGCCCATGATCATGAATGCGTCTGCGAGACCGTTGACTCCGATGCCGATGGGGCGGT 4265 Query 65850 GACGCAAATTGGAACGTCTCG-CCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGA 65908 | |||| || || | ||| | |||| || ||||||||||| || | ||||| || Sbjct 4264 GGCGCATGTTCGA-CTTCTTGGCCTCGGGCACAGGGTAGTAGTTCACGTCGATGATCTTG 4206 Query 65909 TTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTC--GAAATCAAAATGTT 65966 || | |||| || || | || | ||| | ||| ||| ||| | ||| Sbjct 4205 TTGAGGTTGCCACAGACGACCTTGGTGA--CCTCGTGAAGCTTCTTGAAGTCATA-TGTC 4149 Query 65967 TAGGAC---GATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGT 66023 | | | | |||| || | | | | || || || | | || |||| Sbjct 4148 CTCGTGTTGGTTTGCGAGT--CGTAATGGATGTAGGTCGGCAGAGCCATACTGGCAAGGT 4091 Query 66024 TGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGC 66083 |||||||||| | |||||| |||||| | ||||| | || || ||||| || ||| | Sbjct 4090 TGCAGACAGCGACCTCGTCCGGAGCGCTGTACTCTATGATCTCCGTGCAAAGGTTAGAGT 4031 Query 66084 AGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCA 66143 |||||||| | |||| || || |||||| ||| || |||||||| | || Sbjct 4030 TCTTGATGGTGCCGAGGTTCTTCTGGTTCGACTTGCGGTTGGCAGCGTCCTTGTAAAGCA 3971 Query 66144 TGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCT 66203 || | || |||| ||||| |||| ||| | | ||||| ||| || | |||| Sbjct 3970 TGAAAGGGTTGCCAGTCTCCGTCTGGGCCTCCAGAACGGCGTACCAGAGCTTCTGAGCCT 3911 Query 66204 TCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATT 66263 | ||||| || || | ||| | ||| ||||| | ||||||||| ||||| | Sbjct 3910 TGACCGTGCGGCGAGCACGACCCTCGCGCTCGTACTTCTCGTAGAGGGCCTCGAATTCCT 3851 Query 66264 CACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCAT 66323 |||| | || |||| |||| || |||| || ||||| |||||||| || || | Sbjct 3850 CACCATAGACGTCGGCAAGACCGGGGCACTCAGCGGGGCACATGAGCGACCACTCTCCGT 3791 Query 66324 CCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTG 66383 |||||| || || ||| || | || || ||||| |||||||||||||| || || | Sbjct 3790 TCTGTTCGACTCGCTTCATGAACAAGTCGGGAATCCAAAGGGCGTAGAAGAGCTCACGGG 3731 Query 66384 CTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCAT 66443 | || |||||| ||||||| || || | | |||||||||||| |||| ||| | | Sbjct 3730 CGCGAACCTCCTCCTTGCCGTGGTTCTTCCTGAGGTCGAGGAACTCGAAGACGTCCGAGT 3671 Query 66444 GCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGT 66503 |||| || || | ||||||||| || | ||| || ||| |||||| |||||||||| Sbjct 3670 GCCAAGGCTCAATGTAGATGGCAAAAGCCCCCGGTCGCTTGTTGCCACCCTGGTCGACGT 3611 Query 66504 AGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGG 66563 |||||||| ||||||||||| || | ||| || || | ||||| || ||| |||| Sbjct 3610 AGCGAGCGGTGTTGTTGAAGACTCGAAGCATGGGAACAATGCCGTTGGAGACGCCGTTGG 3551 Query 66564 TGCCGTCGATGGGGGATCCTCGTGCC-CGTATATCGTGAACATTCAGACCAATACCACCG 66622 | || | ||| || || ||||| || || ||||| || || || || |||||| Sbjct 3550 TTCCAGCAATGTAAGAGCC-GGTGCCTCGGATGCAGTGAATGTTGAGCCCGATGCCACCG 3492 Query 66623 GCCGTCTTCGAGATGGCAGCACAA-TC-GGCCACTGTCCGGAATATGCCGTCAATGGAGT 66680 |||||||| ||| || ||| || | |||| | | |||||||| ||||||| Sbjct 3491 GCCGTCTTGCTGATCATGGCGCAAGTCTTGAGGGTGTC--GTAGATGCCGTCGATGGAGT 3434 Query 66681 CACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGA 66740 || |||| || || | ||| |||| || | ||||| |||||||| |||| || Sbjct 3433 CATCCTTCATCGTGACCAGGAAGCAGGATGACATCTGGGGATTGGGTGTTCCGGCATTGA 3374 Query 66741 AGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGA 66800 |||||||||| | ||||| || ||||| | |||||| ||||| || |||||| Sbjct 3373 AGAGGGTGGGCGAGGCGTGGGTGAAGTACTTCTCCGACATGAGGTTGTAAGTGTCGATGG 3314 Query 66801 CAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCC 66860 | ||||||| || ||||| |||| || |||||| || | | ||| |||| Sbjct 3313 CCTGGTCAATGTCCCGCCCGTGAATGCCGACGGCGACTCGCATGAGCATATGTTGCGGCC 3254 Query 66861 GTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAA 66920 ||| | | | | ||||| ||| | || ||||| || || ||||||| || | Sbjct 3253 TCTCGGCGACCTTGCCGTTGATGCGCAGCAGATAAGAGCGCTCGAGAGTCTTGAAGCCGA 3194 Query 66921 AGTA 66924 |||| Sbjct 3193 AGTA 3190 >seq2181 Length=22295 Score = 241 bits (266), Expect = 1e-58 Identities = 559/832 (67%), Gaps = 22/832 (3%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || || |||||||| | |||||| |||| | Sbjct 13985 ATCTGGCAAATGTACAAGAAGGCAGAGGCATCGTTCTGGACTGCTGAGGAGATCGACCTT 13926 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| |||||| | |||||||| ||| | ||| | ||| | || || || | Sbjct 13925 TCCAAGGACATGCACGACTGGGACAACAAGTTGAACGA-CAATGAGCGTCACTTTATCAG 13867 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || | || ||||| || || || |||||||| ||||| ||||| | | || || Sbjct 13866 CCACGTCCTCGCCTTCTTCGCAGCATCAGACGGTATTGTCAACGAGAACCTCGTCGAGCG 13807 Query 61263 -TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCA 61321 ||| | | ||||||||||| | ||||| || || ||||||||||||||||| | Sbjct 13806 GTTTAGTTC-GGAGGTGCAAGCAGCAGAGGCTCGATGCTTCTACGGCTTCCAGATCATGA 13748 Query 61322 TGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGG 61381 ||||||| | |||||||||| ||| | | |||||||| || ||||| | || | Sbjct 13747 TGGAGAACATTCACTCGGAGACATACTCTCTGCTCATCGACACATACATTCGCGACCCTC 13688 Query 61382 CGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGG 61441 | |||| || | || ||||||| ||||| || || | || |||| || || | Sbjct 13687 AGCAACGCGACTACCTCTTTGATGCCATGGAGACCATCCCTGTCGTCAAGCAAAAGGCCG 13628 Query 61442 ATTGGGCCTTCAATTGGATCACCAGTACAACG--GCTACATTTGGTGAACGATTGCTGGC 61499 | |||||| | ||||||| | ||| || | || |||| ||| |||||| | || Sbjct 13627 AGTGGGCCATGCGGTGGATCA--ACGACACCGAATCGACCTTTGCTGAGCGATTGATCGC 13570 Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 || || | || ||||| | || ||| ||| || |||||| | ||||| ||| | || Sbjct 13569 CTTCGCCGCCGTGGAGGGCATCTTCTTCTCTGGGTCCTTTGCCTCCATCTTCTGGCTCAA 13510 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 ||| || || || |||||||| || || ||| ||| ||| | || || |||||||| Sbjct 13509 GAAGCGCGGTCTCATGCCCGGCCTCACGTTCTCCAACGAGCTCATCAGCCGAGACGAGGG 13450 Query 61620 CATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCC---GTC 61676 |||| || ||||| | || |||| | |||| ||| || || | Sbjct 13449 TCTGCACACCGACTTTGCGTGCCTACTCTTCA---GTCATCTCAAGAAGCGCCCACACCC 13393 Query 61677 GGAGGAGCGTGTGGGTGAG-ATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGA 61735 |||| ||| | || | || || | || || || || ||||| || | || || | Sbjct 13392 TGAGG-TCGTCT---TGCGCATCATTGGCGAAGCTGTCACCATCGAGCAAGCCTTCCTCA 13337 Query 61736 CTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTG 61795 |||| || |||| ||| | ||||||||||| | || ||| || || || | Sbjct 13336 CTGATGCGCTGCCATGTTCATTGATCGGCATGAACGCCCGTCTGATGAGCCAATACATCG 13277 Query 61796 AATTTGTTGCCGACCGTCTGTTGGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAA 61855 | ||||| |||||||| ||| |||||| | || | || | ||| ||| ||| || Sbjct 13276 AGTTTGTCGCCGACCGACTGCTGGTCGCCCTCGGCAACGAGAAGCACTACAATGCGACAA 13217 Query 61856 ACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTT 61907 | || || || |||||||| | || || ||| | || ||||| || ||||| Sbjct 13216 ATCCCTTCGACTTCATGGAGAACATCTCTCTGCAAGGAAAGACTAACTTTTT 13165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397554006600320