Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20controversa_20[genbank_20GCA_5F001645045.1_202016-05-16] 3,586 sequences; 28,841,097 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2875 535 2e-149 >seq2875 Length=7473 Score = 535 bits (592), Expect = 2e-149 Identities = 532/681 (78%), Gaps = 41/681 (6%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||||||||||||||||||||||||| ||||||| |||||||| | ||||||||||||| Sbjct 4436 GAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAAT 4495 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||||| |||||||||||||| ||||||| |||| ||||||||||||||||||||||| Sbjct 4496 ATTGGGGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAA 4555 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTTGCCCG 219 ||||||||||| || |||||||||||| ||||||||||||||| |||| ||| | Sbjct 4556 AGAGAGTTAAACAGTACGTGAAATTGTCAAAAGGGAAGCGCTTGAGGTTAGACATGCATG 4615 Query 220 CAGTTGCTCAACCGGCCCCTCGGCC--GGTGCACTCTTCTGCGGT-CAGGCCAGCATCAG 276 |||| |||||| | | || || | | | | ||| || |||||||||||| | Sbjct 4616 CAGTAT-TCAACCTTTCTTTTGGGATTGGCGTATT-TGCTGTTGTGCAGGCCAGCATCGG 4673 Query 277 CTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTATAGCCCG 336 | | | | |||||| | | |||||||| | ||||| | |||||||| | Sbjct 4674 TTTTGTCTGCTGGATAATAGTAGGAGAAATGTGGCATC-TTCGGATG-TGTTATAGTCTC 4731 Query 337 -----GG-----GTGGAAT-----GCGGCCCGCC-TGGACTG-AGGTCCGCGCTCCGGC- 378 || ||||| | || |||| || | | | | | || || ||| Sbjct 4732 TTATTGGATACAGTGGACGAGACCGAGGACCGCAGTGTGCCGTAAGGCGGCTCTTCGGAG 4791 Query 379 -----------TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACC 427 ||||||||||||||||||| |||||||||||||||| |||||||||| Sbjct 4792 ACCTTCGCACTTAGGATGCTGGCGTAATGGCCTTAAGCGGCCCGTCTTGAAACACGGACC 4851 Query 428 AAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGA 487 |||||||||||||| | ||||||| |||||||| ||||||| | ||||||||||||||| Sbjct 4852 AAGGAGTCTAACATATTTGCGAGTCTTTGGGTGGCAAACCCATAGGCGTAATGAAAGTGA 4911 Query 488 ACGGAGGTGGGAACCCG-----TGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGAT 542 | | |||||||| || || |||||||||||||||||||| || | | |||| Sbjct 4912 ATGCAGGTGGGATCCTTCTTTATGGAGGTGCACCATCGACCGATCCGGAATTTCTAGGAT 4971 Query 543 GGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 602 ||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| Sbjct 4972 GGATTTGAGTACGAGCACATATGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGG 5031 Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662 | |||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||| Sbjct 5032 GCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGT 5091 Query 663 CAAATTTGGGTATAGGGGCGA 683 ||||||||||||||||||||| Sbjct 5092 CAAATTTGGGTATAGGGGCGA 5112 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079923080300