Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20horrida_20[genbank_20GCA_5F001006505.1_202015-05-14] 767 sequences; 20,105,270 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq23 383 1e-101 seq35 221 1e-52 >seq23 Length=147171 Score = 383 bits (424), Expect = 1e-101 Identities = 639/909 (70%), Gaps = 12/909 (1%) Strand=Plus/Minus Query 66022 GTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACT 66081 |||||||||||| | ||| |||||||| | || |||| || || ||||||| || Sbjct 139861 GTTGCAGACAGCGACCTCATCAGGAGCACTGTATTCGATGATCTCAGTGCACAAGTTGGA 139802 Query 66082 GCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACAT 66141 ||| ||||| || | |||| || || |||||| ||| || |||||||| | Sbjct 139801 GCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAG 139742 Query 66142 CATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGC 66201 |||| | ||| |||| ||||| |||| ||| | |||||||| ||| || | || Sbjct 139741 CATGAAGGGATTGCCAGTCTCGGTCTGGGCCTCGAGGATGGCGTACCAGAGCTTTTGAGC 139682 Query 66202 CTTCACCGTACGTACCGCCCTACCTTTGCGT-TCGTAATGTTCGTAGAGGTGTTCGAAGG 66260 ||| | || || || | ||| | || | | ||||| | ||||||||| ||||| Sbjct 139681 CTTGATGGTGCG-ACGGGCCTTGCCTTCCTTCTCGTACTTCTCGTAGAGGGCCTCGAACT 139623 Query 66261 ATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCAC 66320 || || | || |||| |||| || |||| || || |||||||| ||||| || | Sbjct 139622 CCTCGCCGTACACGTCGGCGAGACCGGGGCACTCGTTGGGGCACATCAGAGACCACTCGC 139563 Query 66321 CATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGC 66380 | | |||||| || | ||| || | || || |||||||| ||||||||||| || | Sbjct 139562 CGTTCTGTTCGACTCTCTTCATGAACAAGTCGGGAATCCAGAGAGCGTAGAAGAGCTCTC 139503 Query 66381 GTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGG 66440 | ||||| |||||| ||||||| || ||||| | |||||||||||| |||| ||| | Sbjct 139502 GAGCTCGGACCTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAACTCGAAGACGTCAG 139443 Query 66441 CATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGA 66500 ||||| || || | ||||||||| || | ||| ||| ||| |||||||||||||| Sbjct 139442 AGTGCCAGGGCTCAACGTAGATGGCAAAGGCGCCGGGACGCTTGTTGCCACCTTGGTCGA 139383 Query 66501 CGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCAT 66560 |||| |||||| |||||| |||| |||| ||| || || | |||||| || ||| | Sbjct 139382 CGTATCGAGCGGTGTTGTTGTAGACTCGCAGCATGGGCACAATCCCGTTGGAGAAGCCGT 139323 Query 66561 TGGTGCCGTCGATGGGGGATCCTCGTGCC-CGTATATCGTGAACATTCAGACCAATACCA 66619 ||||||| ||||| ||| || ||||| || || ||||| || |||||||||||| Sbjct 139322 TGGTGCCCGCGATGTAGGAGCCA-GTGCCACGGATGCAGTGAATGTTGAGACCAATACCA 139264 Query 66620 CCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGG 66677 ||||| ||||| || || || || | |||| | | || || || |||| Sbjct 139263 CCGGCAGTCTTGCTTATCATGGCGCAGGTCTTGAGGGTGTC--GTAGATACCTTCGATGG 139206 Query 66678 AGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCG 66737 |||| |||| ||||| | ||| |||| ||| || || || ||||||||| |||| Sbjct 139205 AGTCGTCCTTCATGGTGACCAGGAAGCACGAAGACAGCTGAGGGTTGGGTGTGCCGGCGT 139146 Query 66738 AGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGA 66797 |||||| ||||| | || || || ||||| | ||||| ||||| ||||||| Sbjct 139145 TGAAGAGAGTGGGCGAGGCATGTGTGAAGTACTTCTCCGACATCAGGTTGTATGTCTCGA 139086 Query 66798 TGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC-ACATCGCATCAGGAGGTATTGA 66856 || |||| || |||| | ||| || || |||| || ||| |||||||| | || ||| Sbjct 139085 TGGCAGCGTCGATGTCTCGGCCGTGGATACCGACGGCGACA-CGCATCAGCATGTGTTGC 139027 Query 66857 GGCCGTTCGACCAGCCGATCC-TTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGAT 66915 ||||| || | || || || ||||| ||| | ||| || | ||| || ||||||| Sbjct 139026 GGCCGCTC-AGCAACCTTGCCATTGATGCGCAGCAGGTATGATCTTTCGAGAGTCTTGAA 138968 Query 66916 ACCAAAGTA 66924 |||||||| Sbjct 138967 GCCAAAGTA 138959 >seq35 Length=115666 Score = 221 bits (244), Expect = 1e-52 Identities = 405/588 (69%), Gaps = 9/588 (2%) Strand=Plus/Plus Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| ||||||| |||| ||| | | |||||||| || || || | || || Sbjct 64401 GGAGAACATCCACTCTGAGACATACTCTCTCCTCATCGACACATATATTCGCGACTCTGC 64460 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | |||| || ||||| | ||||||||||| || || | || |||| ||||| || Sbjct 64461 GCAACGCGAGTACCTGTTCGACGCCATCGAGACCATTCCCGTCGTCAAGCAAAAAGCCGA 64520 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATT 61502 ||||| || ||||||| | || | | ||||||| ||| || || | || || Sbjct 64521 GTGGGCTATCCGATGGATCAGCGACACCCAGTCGACATTTGCTGAGCGCCTGATTGCCTT 64580 Query 61503 TGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAA 61562 ||| | |||||||| | || ||| ||| |||||||| | ||||||||| ||||||| Sbjct 64581 TGCTGCCGTCGAGGGCATCTTCTTCTCTGGCTCGTTTGCGTCCATCTTTTGGCTGAAGAA 64640 Query 61563 ACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCAT 61622 || || || |||||||| ||||||||| |||||| |||| || ||||| ||| | Sbjct 64641 GCGCGGTCTGATGCCCGGCCTGACCTTCTCGAATGAGCTGATTAGCCGAGACGAAGGCCT 64700 Query 61623 GCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGA 61682 ||| || ||||| |||| ||| || | || ||| || || || Sbjct 64701 GCACACCGACTTTGCCTGCCTGCTGTTC---GGCCACCTCAAGAAGCGCCCACATCCCGA 64757 Query 61683 GCGTGTGGGTGAG-ATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACG 61741 | ||| | |||| || || | |||||||| || || ||||| | || ||||| || | Sbjct 64758 GACTGT-GCTGAGAATCATTAGCGAGGCGGTGACCATTGAACAAGCTTTCCTGACCGATG 64816 Query 61742 CTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTG 61801 || |||| || ||||| ||||||||||| | || ||| | ||||| || || |||| Sbjct 64817 CTCTGCCAGTATCACTGATCGGCATGAACGCCCGGCTGATGACTCAGTACATCGAGTTTG 64876 Query 61802 TTGCCGACCGTCTGTTGG--TCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCC 61859 ||||||||||||| ||| ||| || |||| || | ||| ||| ||| ||||| Sbjct 64877 TTGCCGACCGTCTACTGGTTTCGCTT--GGTAACGAGAAGCACTACAATGCGACGAACCC 64934 Query 61860 ATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTT 61907 || || || ||||| | ||||| ||| | || |||||||| || || Sbjct 64935 CTTCGACTTTATGGAGAACATTTCTCTGCAAGGGAAGACGAACTTCTT 64982 Score = 107 bits (118), Expect = 2e-18 Identities = 165/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || || || |||||||| | || ||| |||| || Sbjct 64082 ATCTGGCAAATGTACAAGAAGGCAGAGGCATCGTTCTGGACCGCTGAAGAGATCGACCTG 64141 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| |||||| | || ||||| | | | ||| | || | || ||||| | Sbjct 64142 TCCAAGGACATGCACGATTGGGATAACCGGCTGAACGA-CAACGAGCGCCACTTCATCAG 64200 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || | || |||||||| ||||| ||||| || ||||||||||| | | || || Sbjct 64201 CCACGTCCTCGCCTTCTTTGCTGCTTCAGACGGAATTGTCAATGAGAACCTTGTCGAGCG 64260 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGAT 61316 ||| ||||| |||| | ||||| || || ||||||||||||||||| Sbjct 64261 ATTCAGTTCCGAGGTACAAGCAGCTGAGGCCCGATGCTTCTACGGCTTCCAGAT 64314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397564283608880