Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tilletia_20indica_20[genbank_20GCA_5F001689965.1_202016-07-20] 8,805 sequences; 43,736,635 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq4882 443 4e-122 seq5543 93.3 8e-17 >seq4882 Length=11811 Score = 443 bits (490), Expect = 4e-122 Identities = 285/310 (92%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| |||| |||||| | ||| |||||||||| Sbjct 8078 GAACGAGACCTTAACCTGCTAAATAGCCCGGCCGACTTTGGTTAGCCGCTGGCTTCTTAG 8019 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||||| ||| || ||| |||||||||||||||||||||||||||||||||||||| Sbjct 8018 AGGGACTATTGGCGTCTAGCTAATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 7959 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| || Sbjct 7958 AGATGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAACGAGTTTATCACCTTGTCC 7899 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | |||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 7898 GAAAGGACTGGGTAATCTTGTGAAACTTTGTCGTGCTGGGGATAGAGCATTGCAATTATT 7839 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| ||||||||||| | ||||||||| |||||||||||||||||| Sbjct 7838 GCTCTTCAACGAGGAATTCCTAGTAAGCGTGAGTCATCAGCTCGCGTTGATTACGTCCCT 7779 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 7778 GCCCTTTGTA 7769 Score = 107 bits (118), Expect = 4e-21 Identities = 82/96 (85%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||||| |||| |||||| | ||| |||||||||| Sbjct 8378 GAACGAGACCTTAACCTGCTAAATAGCCCGGCCGACTTTGGTTAGCCGCTGGCTTCTTAG 8319 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGG 114 ||||||||| ||| || ||| |||||||||||||| Sbjct 8318 AGGGACTATTGGCGTCTAGCTAATGGAAGTTTGAGG 8283 >seq5543 Length=38891 Score = 93.3 bits (102), Expect = 8e-17 Identities = 87/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 103 GGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGC 162 ||| ||||||||||| ||||||||||| |||||||| |||| ||||||| | ||| Sbjct 10279 GGAGGTTTGAGGCAA-AACAGGTCTGTAATGCCCTTGGATGAGAGCGGCCGCAGGTGCG- 10336 Query 163 TACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGG 210 ||||||||| ||||||| ||||| ||||| ||| | | |||| | ||| Sbjct 10337 TACACTGACGGAGCCAATGAGTTTATCACGTTGTCTGAAAGGACGGGG 10384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947116599040