Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000765035.1_202014-09-29] 776 sequences; 33,668,918 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq24 239 4e-58 seq443 107 2e-18 >seq24 Length=169626 Score = 239 bits (264), Expect = 4e-58 Identities = 383/545 (70%), Gaps = 9/545 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| ||||| || ||||| |||||||| | |||||| | || | Sbjct 85985 ATTTGGCAGATGTACAAGAAGGCTGAGGCTTCATTCTGGACTGCCGAGGAGATGGACCTT 86044 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTT-ATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| | | || ||| | || | | ||| || ||| | |||||||| Sbjct 86045 TCCAAGGACCTCCACGATTGGAACAACCGCCTCAACGA-CGATGAGCGTCATTTCATCTC 86103 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || ||| | || ||||| ||||| |||||||| ||||| || ||||| | | || || Sbjct 86104 GCACGTGCTCGCCTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAACCTTGTCGAGCG 86163 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| | | ||||| || | | ||||| || || ||||||||||||||||| || Sbjct 86164 GTTCTCCAATGAGGTCCAGGCCGCCGAGGCACGCTGCTTCTACGGCTTCCAGATCATGAT 86223 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| |||||||||||| ||| | |||||||| |||||||||| ||| | Sbjct 86224 GGAGAACATCCACTCGGAGACATACTCGCTGCTCATCGACACGTACATCAAGGATCCCAA 86283 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | | || || | | ||| | |||||||||||||| || | ||| ||| ||||| Sbjct 86284 GCAGCGCGAGCACCTTTTCGACGCCATCGAGACGATTCCTTGCATCAAGAAGAAGGCGGA 86343 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCA 61500 ||||| || | |||||| | |||| | | | || | || || | |||| Sbjct 86344 CTGGGCTTTGCACTGGATCTC--TGACAAGGAGTCCGCCTTCGCGGAGCGGCTCGTGGCT 86401 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560 || |||| || |||||| | || ||| ||| || |||||| | ||||| ||| | ||| Sbjct 86402 TTCGCGGCTGTGGAGGGTATCTTCTTCTCTGGTTCCTTTGCCTCCATCTTCTGGCTCAAG 86461 Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620 || || || || ||||||||||| || ||| ||||||| | || || || ||||||||| Sbjct 86462 AAGCGCGGCCTGATGCCCGGTCTCACGTTCTCCAATGAGCTTATCTCGCGTGACGAGGGC 86521 Query 61621 ATGCA 61625 ||||| Sbjct 86522 ATGCA 86526 Score = 174 bits (192), Expect = 1e-38 Identities = 380/557 (68%), Gaps = 33/557 (6%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| || || |||| || |||||||| || |||||| || | | Sbjct 84522 ATATGGCAGATGTACAAGAACGCCCAAGCGTCGTTCTGGACCGTCGAGGAGATCAACCTC 84463 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCG----GTGAACAA----CATTTCA 61198 |||| ||| | | |||||| | || | ||| | |||| | || |||| Sbjct 84462 GCCAACGACCTCATGGACTGGAAC----TA-CAAGCTCAACGCGAACGAGCGCCACTTCA 84408 Query 61199 TTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGG 61258 | | || | || ||||| ||||| |||||||| ||||| || |||||| | | | Sbjct 84407 TCTCCTACGTACTCGCTTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAATCTCGTCG 84348 Query 61259 AACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTG 61318 | || ||| | | ||||| || | | |||||||| || || |||||||||||||| Sbjct 84347 AGCGGTTCTCTAACGAGGTACAGGCCGCCGAGGCGCGCTGCTTTTACGGCTTCCAGATCA 84288 Query 61319 CCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGC 61378 || |||||||| |||||||||| |||| | |||||||| ||||| |||| ||| | Sbjct 84287 TGATCGAGAATGTGCACTCGGAGACGTACTCGCTGCTCATCGACACGTATATCAAGGACC 84228 Query 61379 GGGCGGAACGTGAACGAT--TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCG--- 61433 || ||||| | || | ||||| | |||||||| || || ||| || | || Sbjct 84227 CCGCTGAACGCG--CGTTCCTGTTCGACGCCATCGACACCATCCCG--TGT-ATCCGTAA 84173 Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA---TTTGGTGAACG 61490 ||| ||||| ||||| || ||||| || || | | | || |||| || | Sbjct 84172 GAAGGCGGACTGGGCGTTGCGCTGGAT--TGAGGACGA-GCGTTCAGTGTTTGCGGAGAG 84116 Query 61491 ATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTT 61550 || | |||||||||| |||||||| || || ||| || ||||| ||||| || || Sbjct 84115 GCTGGTCGCATTTGCGGCAGTCGAGGGCGTGTTCTTCTCCGGGTCGTTCGCCGCCATTTT 84056 Query 61551 TTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCA-- 61608 ||| ||||||| || || | ||||| || |||| ||| || ||| | ||||| Sbjct 84055 CTGGCTGAAGAAGCGGGGGTTGATGCCGGGGTTGACGTTCTCTAACGAGCT--TATCAGC 83998 Query 61609 CGCGACGAGGGCATGCA 61625 || |||||||| ||||| Sbjct 83997 CGAGACGAGGGTATGCA 83981 Score = 87.8 bits (96), Expect = 1e-12 Identities = 126/175 (72%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 61756 CTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG 61815 |||||||||||||| | || |||| ||||| || || || || || || ||||| Sbjct 86705 CTCATCGGCATGAACTCGAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGTCTT 86764 Query 61816 TTGGTCGATTTGGGT-ATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGA 61874 | |||| | | || |||| | | ||| || || ||||| || ||||||||||| Sbjct 86765 CTCGTCGCTCTCGGCGATGAGAAGTA-CTACAACGTGACCAACCCGTTCGATTTCATGGA 86823 Query 61875 CATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929 |||||| ||||| | |||||||| || || |||||||| || || ||||||| Sbjct 86824 CATGATCTCGCTCCAGGGCAAGACAAACTTCTTCGAGAAGCGGGTGTCCGACTAT 86878 >seq443 Length=126294 Score = 107 bits (118), Expect = 2e-18 Identities = 305/482 (63%), Gaps = 50/482 (10%) Strand=Plus/Minus Query 66336 GACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCT 66395 ||| || ||| || || || | |||||| |||||||| | || ||||| || || | Sbjct 85499 GACTCACAAA-AGGTCGGGCACCCAGAGAGCGTAGAATAAGTCACGTGCACGCACTTCTT 85441 Query 66396 CAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCA 66455 | |||| || || || || | ||| ||||| ||||||| ||| |||||||||| || Sbjct 85440 CTTTGCCATGGTTCTTACGAAGGTCAAGGAATTCAAAGACGTCTCCATGCCATGGCTCGG 85381 Query 66456 GGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACAT 66515 ||||| ||| || | || |||||| |||||| || ||||| ||||||||| Sbjct 85380 CGTAGACGGCAAAAGCTCCGGGTCGTTTGTTGCCACCCTGATCGACATAGCGAGCGGTGG 85321 Query 66516 TGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGG 66575 || ||| || || | |||||| || | ||||| || | || || ||||| ||||| Sbjct 85320 CGTCGAACACGCGTAGCATCGGCACAATGCCGTTTGAGTAACCGTTTGTGCCAGCGATGT 85261 Query 66576 GGGATCCTCG-------------------------------------------------T 66586 ||| | || | Sbjct 85260 AGGAGCTGCGCCGTTATCAGCGAGAAAGAACATAACGTAGTCGAGAGACCGCACCCAGTT 85201 Query 66587 GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA 66646 ||||| || | ||||| | | ||||||||||| ||||| || || ||| |||||| Sbjct 85200 GCCCGAATGTTGTGAATACTGAGACCAATACCGCCGGCGGTTTTGCTGATCATCGCACAA 85141 Query 66647 TCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCAT 66706 || | ||| | | ||||| || |||||||| |||| ||| || || ||||| Sbjct 85140 TCCTTGAGAGTCGAGTAGATGCCCTCGATGGAGTCGTCCTTCATGCACACAAGAAAGCAT 85081 Query 66707 GAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAG 66766 ||||| || ||||| ||||| ||| |||| ||| |||||||| | || || || ||| Sbjct 85080 GAACTCAGCTGGGGGTTGGGAGTGCCGGCGTTGAAAAGGGTGGGCGATGCATGGGTGAAG 85021 Query 66767 TA 66768 || Sbjct 85020 TA 85019 Score = 91.5 bits (100), Expect = 1e-13 Identities = 182/269 (68%), Gaps = 22/269 (8%) Strand=Plus/Minus Query 65812 GTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGC 65871 |||||||||||| || || || || |||||||| || || |||| |||||||| | ||| Sbjct 86114 GTCGGCCAGACCCTGCACGCCGATTCCGATGGGGCGGTGGCGCATGTTGGAACGACGCGC 86055 Query 65872 CTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATG 65931 ||| || | ||| |||| |||| ||||| ||||| |||| ||| | ||||| | Sbjct 86054 CTCCGGAATAGGATAGTGGTTGACGTCGATGATGCGGTTCAGGTTGAACGCGACCACCT- 85996 Query 65932 CACGATACGTC--GCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGAC 65989 | ||||| |||| | | ||||| ||| | | || || || |||| Sbjct 85995 -TGGTCACGTCGTGCAACTTCTGGAAAT-----TGTACTTGCCATTCTCGA-TGAAGGAC 85943 Query 65990 ACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCG 66049 || || || | ||| ||||| ||||||||||| |||| || |||| Sbjct 85942 ------------GGGAGCGCGATAGACGCGAGATTGCAGACAGCCGTCTCATCGGGAGAC 85895 Query 66050 GTATACTCGACAATTTCGGTGCACAGATT 66078 | ||||||||||| |||||||| ||||| Sbjct 85894 GAGTACTCGACAATCTCGGTGCAGAGATT 85866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397564240000640