Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2268 361 2e-97 >seq2268 Length=2405 Score = 361 bits (400), Expect = 2e-97 Identities = 264/305 (87%), Gaps = 5/305 (2%) Strand=Plus/Plus Query 379 TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAA 438 ||||||| || || ||||||| ||| || ||||||||| ||||||||||||||||||||| Sbjct 1780 TAGGATGTTGACGAAATGGTTTTAAACGACCCGTCTTGAAACACGGACCAAGGAGTCTAA 1839 Query 439 CATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGG 498 ||| | ||||||||||||||| ||||||| | |||| ||||||||||||| ||||| | Sbjct 1840 CATACACGCGAGTGTTTGGGTGGCAAACCCTTACGCGAAATGAAAGTGAACTTAGGTGCG 1899 Query 499 AACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGC 558 | | |||||| ||||||||| || ||| | || | || ||| ||||||||||| Sbjct 1900 ATCTTC----GGTGCAGCATCGACCGGTCTGGATTTTTTTG-ATAGATCTGAGTAAGAGC 1954 Query 559 ATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 618 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1955 GTGTCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAA 2014 Query 619 CTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 |||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||| Sbjct 2015 CTCTGGTGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGG 2074 Query 679 GGCGA 683 ||||| Sbjct 2075 GGCGA 2079 Score = 250 bits (276), Expect = 1e-63 Identities = 240/303 (79%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | |||||| |||||||||||||||| | ||||||| ||||||| | ||||||| Sbjct 1344 TTCTAAGAGTCGGTTTGTTTGGGAATGCAGACCAAAATGGGTGGTAAATACCATCTAAAG 1403 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||||||| |||||||||||||| |||||| |||| ||||||||||||||||| Sbjct 1404 CTAAATATTGGCGAGAGACCGATAGCGAACAAGTCCCGTGAGGGAAAGATGAAAAGCACT 1463 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACT 213 ||| |||||||||| ||||| |||||||||||| |||||||| |||||| |||||| | Sbjct 1464 TTGAAAAGAGAGTT-AAAAGTACGTGAAATTGTCAAAAGGGAAACGCTTGAAACCAGTAT 1522 Query 214 TGCCCGCAGTTGCTCAACCGGCC--CCTCGGCCGGTGCACTCTTCTGCGGTCAGGCCAGC 271 ||| |||| | |||| || || | | || ||||||||| ||| | | || || | Sbjct 1523 TGCTTGCAGGTAATCAATCGTCCCTCTTGGGGCGGTGCACTTGCCTGTCGGCGGGTCAAC 1582 Query 272 ATCAGCTCGGGCGGTCGGAT-AAAGGCCCCGGGAATGTGGCCCCCTTCGGGGGGTGTTAT 330 ||||| | || | |||| ||| ||| | ||| |||||||| |||||||||||||| Sbjct 1583 ATCAGTTTGGTTCG--GGATAAAAAGCCAGGAGAAGGTGGCCCCTCTCGGGGGGTGTTAT 1640 Query 331 AGC 333 ||| Sbjct 1641 AGC 1643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079793050400