Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2272 288 3e-75 seq2271 118 3e-24 >seq2272 Length=1750 Score = 288 bits (318), Expect = 3e-75 Identities = 209/240 (87%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1054 CTTTTGTTCTACTCGAGATTTCTGTTCTCGATGAGTCCCCCTTAGGACACCTGCGTTATC 995 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 994 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCAACCCGGATC 935 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAAAAT-GGTCGGTGAAGACCAGTTCCGCTTCATTG 185 ||||| ||||||||| | |||| || | || | || || |||| ||||| |||||| Sbjct 934 AGCCCGTAAAGGACCTTGAAGCCAAAAGGTGGGACTGTTAATCCCAGCTCCGCCTCATTG 875 Query 186 ATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGGCTCCCACTT 245 | |||||||||| ||||||| |||||||||||||||| |||||||| |||||||||| Sbjct 874 AATAAGTAAAAAGACGATAAAGGTAGTGGTATTTCACCGGCGCCGAA---GCTCCCACTT 818 >seq2271 Length=619 Score = 118 bits (130), Expect = 3e-24 Identities = 72/76 (95%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 468 CGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCG 527 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 568 CGCGCTTGGT---ATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCG 512 Query 528 TCAACATCACTTTCTG 543 |||||| ||||||||| Sbjct 511 TCAACACCACTTTCTG 496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635042235904