Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trametes_20cinnabarina_20[genbank_20GCA_5F000787515.1_202014-11-26] 9,648 sequences; 31,621,284 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq38 233 2e-56 seq5619 116 3e-21 >seq38 Length=96116 Score = 233 bits (258), Expect = 2e-56 Identities = 382/545 (70%), Gaps = 9/545 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| ||||| || ||||| |||||||| | |||||| | || | Sbjct 70604 ATTTGGCAGATGTACAAGAAGGCTGAGGCTTCATTCTGGACTGCCGAGGAGATGGACCTT 70545 Query 61147 TCCAAAGACATGAATGACTGGGAG---CGTTT-ATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| | | || ||| | || | | ||| || ||| | |||||||| Sbjct 70544 TCCAAGGACCTCCACGATTGGAACAACCGCCTCAACGA-CGATGAGCGTCATTTCATCTC 70486 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || ||| | || ||||| || || |||||||| ||||| || ||||| | | || || Sbjct 70485 GCACGTGCTCGCCTTCTTCGCTGCCTCGGACGGCATCGTGAACGAGAACCTTGTCGAGCG 70426 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| | | ||||| || | | ||||| || || ||||||||||||||||| || Sbjct 70425 GTTCTCCAATGAGGTCCAGGCCGCCGAGGCACGCTGCTTCTACGGCTTCCAGATCATGAT 70366 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| |||||||||||| ||| | |||||||| |||||||||| ||| | Sbjct 70365 GGAGAACATCCACTCGGAGACATACTCGCTGCTCATCGACACGTACATCAAGGATCCCAA 70306 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | | || || | | ||| | |||||||||||||| || | ||| ||| ||||| Sbjct 70305 GCAGCGCGAGCACCTTTTCGACGCCATCGAGACGATTCCTTGCATCAAGAAGAAGGCGGA 70246 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAA--CGGCTACATTTGGTGAACGATTGCTGGCA 61500 ||||| || | |||||| | |||| | | | || | || || | |||| Sbjct 70245 CTGGGCTTTGCACTGGATCTC--TGACAAGGAGTCCGCCTTCGCGGAGCGGCTCGTGGCT 70188 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560 || |||| || |||||| | || ||| ||| || |||||| | ||||| ||| | ||| Sbjct 70187 TTCGCGGCTGTGGAGGGTATCTTCTTCTCTGGTTCCTTTGCCTCCATCTTCTGGCTCAAG 70128 Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620 || || || || ||||||||||| || ||| ||||||| | || || || ||||||||| Sbjct 70127 AAGCGCGGCCTGATGCCCGGTCTCACGTTCTCCAATGAGCTTATCTCGCGTGACGAGGGC 70068 Query 61621 ATGCA 61625 ||||| Sbjct 70067 ATGCA 70063 Score = 170 bits (188), Expect = 2e-37 Identities = 378/555 (68%), Gaps = 29/555 (5%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| || || |||| || |||||||| || |||||| || | | Sbjct 72090 ATATGGCAGATGTACAAGAACGCCCAAGCGTCGTTCTGGACCGTCGAGGAGATCAACCTC 72149 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCG--AGCGGTGAACAACATTTCATT 61200 |||| ||| | | |||||| | | | | || | || | | || ||||| Sbjct 72150 GCCAACGACCTCATGGACTGGAACTACAAGCTCAACGCAAACG---AGCGCCACTTCATC 72206 Query 61201 AAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAA 61260 | ||| | || ||||| ||||| |||||||| ||||| || |||||| | | || Sbjct 72207 TCCTACGTGCTTGCTTTCTTCGCCGCCTCGGACGGCATCGTGAACGAGAATCTCGTCGAG 72266 Query 61261 CGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCC 61320 || ||| | | ||||| || | | |||||||| || || || ||||||||||| Sbjct 72267 CGGTTCTCTAACGAGGTACAGGCCGCCGAGGCGCGCTGCTTTTATGGCTTCCAGATCATG 72326 Query 61321 ATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGG 61380 || |||||||| |||||||||| |||| | |||||||| ||||| |||| ||| | Sbjct 72327 ATCGAGAATGTGCACTCGGAGACGTACTCGCTGCTCATCGACACGTATATCAAGGACCCC 72386 Query 61381 GCGGAACGTGAACGAT--TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCG---GA 61435 || ||||| | || | ||||| | |||||||| || || ||| || | || || Sbjct 72387 GCTGAACGCG--CGTTCCTGTTCGACGCCATCGACACCATCCCG--TGT-ATCCGTAAGA 72441 Query 61436 AAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACA---TTTGGTGAACGAT 61492 | ||||| ||||| || ||||| || || | | | || |||| || | Sbjct 72442 AGGCGGACTGGGCGTTGCGCTGGAT--TGAGGACGA-GCGTTCAGTGTTTGCGGAGAGGC 72498 Query 61493 TGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTT 61552 || | |||||||||| |||||||| || || ||| || ||||| ||||| || || | Sbjct 72499 TGGTCGCATTTGCGGCAGTCGAGGGCGTGTTCTTCTCCGGGTCGTTCGCCGCCATTTTCT 72558 Query 61553 GGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCA--CG 61610 || ||||||| || || | ||||| || |||| ||| || ||| | ||||| || Sbjct 72559 GGCTGAAGAAGCGGGGGTTGATGCCGGGGTTGACGTTCTCTAACGAGCT--TATCAGCCG 72616 Query 61611 CGACGAGGGCATGCA 61625 |||||||| ||||| Sbjct 72617 AGACGAGGGTATGCA 72631 Score = 87.8 bits (96), Expect = 1e-12 Identities = 126/175 (72%), Gaps = 2/175 (1%) Strand=Plus/Minus Query 61756 CTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTG 61815 |||||||||||||| | || |||| ||||| || || || || || || ||||| Sbjct 69884 CTCATCGGCATGAACTCGAAGCTCATGTGCCAGTACATCGAGTTCGTCGCTGATCGTCTT 69825 Query 61816 TTGGTCGATTTGGGT-ATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGA 61874 | |||| | | || |||| | | ||| || || ||||| || ||||||||||| Sbjct 69824 CTCGTCGCTCTCGGCGATGAGAAGTA-CTACAACGTGACCAACCCGTTCGATTTCATGGA 69766 Query 61875 CATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929 |||||| ||||| | |||||||| || || |||||||| || || ||||||| Sbjct 69765 CATGATCTCGCTCCAGGGCAAGACAAACTTCTTCGAGAAGCGGGTGTCCGACTAT 69711 >seq5619 Length=11060 Score = 116 bits (128), Expect = 3e-21 Identities = 307/482 (64%), Gaps = 50/482 (10%) Strand=Plus/Plus Query 66336 GACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCT 66395 ||| || ||| || || || | |||||| |||||||| | || ||||| || || | Sbjct 2851 GACTCACAAA-AGGTCGGGCACCCAGAGAGCGTAGAATAAGTCACGTGCACGCACTTCTT 2909 Query 66396 CAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCA 66455 | |||| || || || || | ||| ||||| ||||||| ||| |||||||||| || | Sbjct 2910 CTTTGCCATGGTTCTTACGAAGGTCAAGGAATTCAAAGACGTCTCCATGCCATGGCTCGA 2969 Query 66456 GGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACAT 66515 ||||| ||| || | || |||||| |||||| || ||||| ||||||||| Sbjct 2970 CGTAGACGGCAAAAGCTCCGGGTCGTTTGTTGCCACCCTGATCGACATAGCGAGCGGTGG 3029 Query 66516 TGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGG 66575 || ||| || || | |||||| || | ||||| || | || || ||||| ||||| Sbjct 3030 CGTCGAACACGCGTAGCATCGGCACAATGCCGTTTGAGTAACCGTTTGTGCCAGCGATGT 3089 Query 66576 GGGATCCTCG-------------------------------------------------T 66586 ||| | || | Sbjct 3090 AGGAGCTGCGCCGATATCAGCGAGAAAGAACATAACGTAGTCGAGAGACCGCACCCAGTT 3149 Query 66587 GCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAA 66646 ||||| || | ||||| ||| ||||||||||| ||||| || || ||| |||||| Sbjct 3150 GCCCGAATGTTGTGAATATTGAGACCAATACCGCCGGCGGTTTTGCTGATCATCGCACAA 3209 Query 66647 TCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCAT 66706 || | ||| | | ||||| || |||||||| |||| ||| || || ||||| Sbjct 3210 TCCTTGAGAGTCGAGTAGATGCCCTCGATGGAGTCGTCCTTCATGCACACAAGAAAGCAT 3269 Query 66707 GAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAG 66766 ||||| || ||||| ||||| ||| |||| ||| |||||||| | || || || ||| Sbjct 3270 GAACTCAGCTGGGGGTTGGGAGTGCCGGCGTTGAAAAGGGTGGGCGATGCATGGGTGAAG 3329 Query 66767 TA 66768 || Sbjct 3330 TA 3331 Score = 93.3 bits (102), Expect = 3e-14 Identities = 255/388 (66%), Gaps = 26/388 (7%) Strand=Plus/Plus Query 65695 CTCCTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCG 65754 |||||| || | | |||||| | || | |||||| || ||||| ||||| || | Sbjct 2119 CTCCTTCGCCATCTCACAGCTCGCTTCAACAGCGGCATGGTAGATGGTTTCGAAGATCTG 2178 Query 65755 TCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACA--AAAGTG 65812 | || || |||||||| || ||||||| | || || || || | | Sbjct 2179 CAGGTTGAGCCTGCGTGCCTCGGGCGAGTCAAACGGCATGCGCAG--GGCCATGAACGCG 2236 Query 65813 TCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCC 65872 ||||||||||| || || || || |||||||| || || |||| |||||||| | |||| Sbjct 2237 TCGGCCAGACCCTGCACGCCGATTCCGATGGGGCGGTGGCGCATGTTGGAACGACGCGCC 2296 Query 65873 TCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACATGC 65932 || || | ||| |||| |||| ||||| ||||| |||| ||| | ||||| | Sbjct 2297 TCCGGAATAGGATAGTGGTTGACGTCGATGATGCGGTTCAGGTTGAACGCGACCACCT-- 2354 Query 65933 ACGATACGTC--GCAATTGTTCGAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACA 65990 | ||||| |||| | | ||||| ||| | | || || || |||| Sbjct 2355 TGGTCACGTCGTGCAACTTCTGGAAAT-----TGTACTTGCCATTCTCGA-TGAAGGAC- 2407 Query 65991 CCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGG 66050 || || || | ||| ||||| ||||||||||| |||| || |||| | Sbjct 2408 -----------GGGAGCGCGATAGACGCGAGATTGCAGACAGCCGTCTCATCGGGAGACG 2456 Query 66051 TATACTCGACAATTTCGGTGCACAGATT 66078 ||||||||||| |||||||| ||||| Sbjct 2457 AGTACTCGACAATCTCGGTGCAGAGATT 2484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397521251966720