Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Tremella_20fuciformis_20[genbank_20GCA_5F000987905.1_202015-05-04] 3,502 sequences; 23,635,607 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq591 439 5e-121 seq2472 250 5e-64 >seq591 Length=3483 Score = 439 bits (486), Expect = 5e-121 Identities = 284/310 (92%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||||||||||||||||||||||||||||| ||||| || ||||| |||||||||| Sbjct 1170 GAACGAGACCTTAACCTGCTAAATAGCCAGGCCGGCTTTTGCTGGTCGTGGGCTTCTTAG 1111 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 ||||||| ||||| || || ||| |||||||||||||||||||||||||||||||||||| Sbjct 1110 AGGGACTGTCGGCGTCTAGTCGACGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 1051 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCC 198 ||||||||||||||||||||||||||||||||| |||||| |||||||||| ||||| || Sbjct 1050 AGATGTTCTGGGCCGCACGCGCGCTACACTGACCGAGCCAGCGAGTTCATCGCCTTGCCC 991 Query 199 GGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATT 258 | ||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 990 GAGAGGGTTGGGTAATCTTGTGAAACTCGGTCGTGCTGGGGATAGAGCATTGCAATTATT 931 Query 259 GCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCT 318 ||||||||||||||||| ||||||||||| | |||| |||| |||||||||||||||||| Sbjct 930 GCTCTTCAACGAGGAATACCTAGTAAGCGTGAGTCACCAGCTCGCGTTGATTACGTCCCT 871 Query 319 GCCCTTTGTA 328 |||||||||| Sbjct 870 GCCCTTTGTA 861 >seq2472 Length=4788 Score = 250 bits (276), Expect = 5e-64 Identities = 222/274 (81%), Gaps = 14/274 (5%) Strand=Plus/Plus Query 69 CGGCTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAA----CAG 123 |||||||| ||||||||| ||||| || || | | | || ||||||||||||| ||| Sbjct 4006 CGGCTTCTCAGAGGGACTGTCGGCGTCTAGTCAACGAAATTTTGAGGCAATAAGTAACAG 4065 Query 124 GTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAG 183 ||||||||| ||||||||||||||||||||| |||| |||||||||| |||||| ||| Sbjct 4066 GTCTGTGATAGCCTTAGATGTTCTGGGCCGCATGCGCACTACACTGACCGAGCCACAGAG 4125 Query 184 TTCATCACCTTGGCCGGAAGGTCTGGG-----TAATCTTGTTAAACTCTGTCGTGCTGGG 238 || | ||| | ||| ||| |||| ||||||||| | ||| ||||||||| Sbjct 4126 TTTCCCGCCTCGCCCGAGAGGATTGGGTTGGGTAATCTTGTGAGACTTGAACGTGCTGGG 4185 Query 239 GATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGC--GCGT--GTCA 294 | ||||||||||||||||||||| ||||| |||||| |||||||||| |||| |||| Sbjct 4186 AAAAGAGCATTGCAATTATTGCTCGTCAACAAGGAATACCTAGTAAGCAAGCGTGAGTCA 4245 Query 295 TCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||| |||||||||||||||||||||||||||| Sbjct 4246 CCAGCTCGCGTTGATTACGTCCCTGCCCTTTGTA 4279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947166829056