Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq20 295 1e-77 >seq20 Length=656372 Score = 295 bits (326), Expect = 1e-77 Identities = 225/264 (85%), Gaps = 9/264 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| ||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 311224 ACTCGTTGTCTCTGTCAGTGTAGCGCGCGTGCAGCCCGGAACATCTAAGGGCATCACAGA 311165 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGCCA-- 118 ||||||||||||| | ||||| || || | | || |||||||||||||| || Sbjct 311164 CCTGTTATTGCCTTTTGCCTCCATCACCTAGACGGTCGATTGTCCCTCTAAGAAGACATA 311105 Query 119 ----GCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 |||| ||| || ||| | | ||||||||||||| ||||||||||||||||||| Sbjct 311104 AGGGGCCAACAA--ATTGTCAACCCGTCTATTTAGCAGGTCAAGGTCTCGTTCGTTATCG 311047 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 311046 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 310987 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||| || ||||||||||| Sbjct 310986 TCATGAAAGCGCCATCAATCTGTC 310963 Score = 295 bits (326), Expect = 1e-77 Identities = 225/264 (85%), Gaps = 9/264 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| ||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 319370 ACTCGTTGTCTCTGTCAGTGTAGCGCGCGTGCAGCCCGGAACATCTAAGGGCATCACAGA 319311 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGCCA-- 118 ||||||||||||| | ||||| || || | | || |||||||||||||| || Sbjct 319310 CCTGTTATTGCCTTTTGCCTCCATCACCTAGACGGTCGATTGTCCCTCTAAGAAGACATA 319251 Query 119 ----GCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 |||| ||| || ||| | | ||||||||||||| ||||||||||||||||||| Sbjct 319250 AGGGGCCAACAA--ATTGTCAACCCGTCTATTTAGCAGGTCAAGGTCTCGTTCGTTATCG 319193 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 319192 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 319133 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||| || ||||||||||| Sbjct 319132 TCATGAAAGCGCCATCAATCTGTC 319109 Score = 295 bits (326), Expect = 1e-77 Identities = 225/264 (85%), Gaps = 9/264 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| ||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 327516 ACTCGTTGTCTCTGTCAGTGTAGCGCGCGTGCAGCCCGGAACATCTAAGGGCATCACAGA 327457 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGCCA-- 118 ||||||||||||| | ||||| || || | | || |||||||||||||| || Sbjct 327456 CCTGTTATTGCCTTTTGCCTCCATCACCTAGACGGTCGATTGTCCCTCTAAGAAGACATA 327397 Query 119 ----GCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 |||| ||| || ||| | | ||||||||||||| ||||||||||||||||||| Sbjct 327396 AGGGGCCAACAA--ATTGTCAACCCGTCTATTTAGCAGGTCAAGGTCTCGTTCGTTATCG 327339 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 327338 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 327279 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||| || ||||||||||| Sbjct 327278 TCATGAAAGCGCCATCAATCTGTC 327255 Score = 295 bits (326), Expect = 1e-77 Identities = 225/264 (85%), Gaps = 9/264 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| ||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 335662 ACTCGTTGTCTCTGTCAGTGTAGCGCGCGTGCAGCCCGGAACATCTAAGGGCATCACAGA 335603 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGCCA-- 118 ||||||||||||| | ||||| || || | | || |||||||||||||| || Sbjct 335602 CCTGTTATTGCCTTTTGCCTCCATCACCTAGACGGTCGATTGTCCCTCTAAGAAGACATA 335543 Query 119 ----GCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 |||| ||| || ||| | | ||||||||||||| ||||||||||||||||||| Sbjct 335542 AGGGGCCAACAA--ATTGTCAACCCGTCTATTTAGCAGGTCAAGGTCTCGTTCGTTATCG 335485 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 335484 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 335425 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||| || ||||||||||| Sbjct 335424 TCATGAAAGCGCCATCAATCTGTC 335401 Score = 295 bits (326), Expect = 1e-77 Identities = 225/264 (85%), Gaps = 9/264 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| ||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 343808 ACTCGTTGTCTCTGTCAGTGTAGCGCGCGTGCAGCCCGGAACATCTAAGGGCATCACAGA 343749 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGCCA-- 118 ||||||||||||| | ||||| || || | | || |||||||||||||| || Sbjct 343748 CCTGTTATTGCCTTTTGCCTCCATCACCTAGACGGTCGATTGTCCCTCTAAGAAGACATA 343689 Query 119 ----GCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 |||| ||| || ||| | | ||||||||||||| ||||||||||||||||||| Sbjct 343688 AGGGGCCAACAA--ATTGTCAACCCGTCTATTTAGCAGGTCAAGGTCTCGTTCGTTATCG 343631 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 343630 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 343571 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||| || ||||||||||| Sbjct 343570 TCATGAAAGCGCCATCAATCTGTC 343547 Score = 295 bits (326), Expect = 1e-77 Identities = 225/264 (85%), Gaps = 9/264 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| ||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 351954 ACTCGTTGTCTCTGTCAGTGTAGCGCGCGTGCAGCCCGGAACATCTAAGGGCATCACAGA 351895 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGCCA-- 118 ||||||||||||| | ||||| || || | | || |||||||||||||| || Sbjct 351894 CCTGTTATTGCCTTTTGCCTCCATCACCTAGACGGTCGATTGTCCCTCTAAGAAGACATA 351835 Query 119 ----GCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 |||| ||| || ||| | | ||||||||||||| ||||||||||||||||||| Sbjct 351834 AGGGGCCAACAA--ATTGTCAACCCGTCTATTTAGCAGGTCAAGGTCTCGTTCGTTATCG 351777 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 351776 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 351717 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||| || ||||||||||| Sbjct 351716 TCATGAAAGCGCCATCAATCTGTC 351693 Score = 295 bits (326), Expect = 1e-77 Identities = 225/264 (85%), Gaps = 9/264 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| ||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 360100 ACTCGTTGTCTCTGTCAGTGTAGCGCGCGTGCAGCCCGGAACATCTAAGGGCATCACAGA 360041 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGCCA-- 118 ||||||||||||| | ||||| || || | | || |||||||||||||| || Sbjct 360040 CCTGTTATTGCCTTTTGCCTCCATCACCTAGACGGTCGATTGTCCCTCTAAGAAGACATA 359981 Query 119 ----GCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 |||| ||| || ||| | | ||||||||||||| ||||||||||||||||||| Sbjct 359980 AGGGGCCAACAA--ATTGTCAACCCGTCTATTTAGCAGGTCAAGGTCTCGTTCGTTATCG 359923 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359922 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 359863 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||| || ||||||||||| Sbjct 359862 TCATGAAAGCGCCATCAATCTGTC 359839 Score = 295 bits (326), Expect = 1e-77 Identities = 225/264 (85%), Gaps = 9/264 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| ||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 368246 ACTCGTTGTCTCTGTCAGTGTAGCGCGCGTGCAGCCCGGAACATCTAAGGGCATCACAGA 368187 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGCCA-- 118 ||||||||||||| | ||||| || || | | || |||||||||||||| || Sbjct 368186 CCTGTTATTGCCTTTTGCCTCCATCACCTAGACGGTCGATTGTCCCTCTAAGAAGACATA 368127 Query 119 ----GCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 |||| ||| || ||| | | ||||||||||||| ||||||||||||||||||| Sbjct 368126 AGGGGCCAACAA--ATTGTCAACCCGTCTATTTAGCAGGTCAAGGTCTCGTTCGTTATCG 368069 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 368068 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 368009 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||| || ||||||||||| Sbjct 368008 TCATGAAAGCGCCATCAATCTGTC 367985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796799814744