Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900080155.1_202016-11-03] 24 sequences; 20,625,025 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq20 104 1e-20 >seq20 Length=656372 Score = 104 bits (114), Expect = 1e-20 Identities = 74/81 (91%), Gaps = 3/81 (4%) Strand=Plus/Minus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 |||| |||||||||||||| || ||||||||| ||||||||||| ||||||||||||||| Sbjct 311414 AAGTCCTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAG 311357 Query 104 GGACGTAATACAACGCAAGCT 124 ||||||| | ||||||||||| Sbjct 311356 GGACGTAGT-CAACGCAAGCT 311337 Score = 104 bits (114), Expect = 1e-20 Identities = 74/81 (91%), Gaps = 3/81 (4%) Strand=Plus/Minus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 |||| |||||||||||||| || ||||||||| ||||||||||| ||||||||||||||| Sbjct 319560 AAGTCCTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAG 319503 Query 104 GGACGTAATACAACGCAAGCT 124 ||||||| | ||||||||||| Sbjct 319502 GGACGTAGT-CAACGCAAGCT 319483 Score = 104 bits (114), Expect = 1e-20 Identities = 74/81 (91%), Gaps = 3/81 (4%) Strand=Plus/Minus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 |||| |||||||||||||| || ||||||||| ||||||||||| ||||||||||||||| Sbjct 327706 AAGTCCTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAG 327649 Query 104 GGACGTAATACAACGCAAGCT 124 ||||||| | ||||||||||| Sbjct 327648 GGACGTAGT-CAACGCAAGCT 327629 Score = 104 bits (114), Expect = 1e-20 Identities = 74/81 (91%), Gaps = 3/81 (4%) Strand=Plus/Minus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 |||| |||||||||||||| || ||||||||| ||||||||||| ||||||||||||||| Sbjct 335852 AAGTCCTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAG 335795 Query 104 GGACGTAATACAACGCAAGCT 124 ||||||| | ||||||||||| Sbjct 335794 GGACGTAGT-CAACGCAAGCT 335775 Score = 104 bits (114), Expect = 1e-20 Identities = 74/81 (91%), Gaps = 3/81 (4%) Strand=Plus/Minus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 |||| |||||||||||||| || ||||||||| ||||||||||| ||||||||||||||| Sbjct 343998 AAGTCCTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAG 343941 Query 104 GGACGTAATACAACGCAAGCT 124 ||||||| | ||||||||||| Sbjct 343940 GGACGTAGT-CAACGCAAGCT 343921 Score = 104 bits (114), Expect = 1e-20 Identities = 74/81 (91%), Gaps = 3/81 (4%) Strand=Plus/Minus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 |||| |||||||||||||| || ||||||||| ||||||||||| ||||||||||||||| Sbjct 352144 AAGTCCTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAG 352087 Query 104 GGACGTAATACAACGCAAGCT 124 ||||||| | ||||||||||| Sbjct 352086 GGACGTAGT-CAACGCAAGCT 352067 Score = 104 bits (114), Expect = 1e-20 Identities = 74/81 (91%), Gaps = 3/81 (4%) Strand=Plus/Minus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 |||| |||||||||||||| || ||||||||| ||||||||||| ||||||||||||||| Sbjct 360290 AAGTCCTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAG 360233 Query 104 GGACGTAATACAACGCAAGCT 124 ||||||| | ||||||||||| Sbjct 360232 GGACGTAGT-CAACGCAAGCT 360213 Score = 104 bits (114), Expect = 1e-20 Identities = 74/81 (91%), Gaps = 3/81 (4%) Strand=Plus/Minus Query 44 AAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAG 103 |||| |||||||||||||| || ||||||||| ||||||||||| ||||||||||||||| Sbjct 368436 AAGTCCTCACTAAGCCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAG 368379 Query 104 GGACGTAATACAACGCAAGCT 124 ||||||| | ||||||||||| Sbjct 368378 GGACGTAGT-CAACGCAAGCT 368359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300799932320