Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq629 172 8e-41 seq379 172 8e-41 seq42 132 7e-29 seq2542 113 7e-23 seq611 113 7e-23 >seq629 Length=176 Score = 172 bits (190), Expect = 8e-41 Identities = 146/176 (83%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||| | Sbjct 3 GTACAAAGGGCAGGGACGTAGTCAACGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 60 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||| ||| | || ||||||| ||||| || ||||| ||| || Sbjct 61 CTCGTTGAAGAGCAAAAATTACAAAGCTCCATCCCCAGCACGACAAAGTTTCACAAGTTT 120 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 |||| | | | |||| ||||| || |||||||| | ||||||||||||||| Sbjct 121 ACCCAGTCATTTCGGACAAGGGGAACCACTCGTTGTCTCTGTCAGTGTAGCGCGCG 176 >seq379 Length=183 Score = 172 bits (190), Expect = 8e-41 Identities = 146/176 (83%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||| | Sbjct 174 GTACAAAGGGCAGGGACGTAGTCAACGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 117 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||| ||| | || ||||||| ||||| || ||||| ||| || Sbjct 116 CTCGTTGAAGAGCAAAAATTACAACGCTCCATCCCCAGCACGACAAAGTTTCACAAGTTT 57 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 |||| | | | |||| ||||| || |||||||| | ||||||||||||||| Sbjct 56 ACCCAGTCATTTCGGACAAGGGGAACCACTCGTTGTCTCTGTCAGTGTAGCGCGCG 1 >seq42 Length=1514 Score = 132 bits (146), Expect = 7e-29 Identities = 110/133 (83%), Gaps = 1/133 (1%) Strand=Plus/Plus Query 88 TCTATCCCCATCACGATGAAATTTCA-AAGATTACCCGGACCTGTCGGCCAAGGTGATAG 146 || ||||||| ||||| || ||||| ||| |||||| | | | |||| ||||| || Sbjct 3 TCCATCCCCAGCACGACAAAGTTTCACAAGTTTACCCAGTCATTTCGGACAAGGGGAACC 62 Query 147 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 206 |||||||| | |||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 63 ACTCGTTGTCTCTGTCAGTGTAGCGCGCGTGCAGCCCGGAACATCTAAGGGCATCACAGA 122 Query 207 CCTGTTATTGCCT 219 ||||||||||||| Sbjct 123 CCTGTTATTGCCT 135 >seq2542 Length=176 Score = 113 bits (124), Expect = 7e-23 Identities = 77/84 (92%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| ||| Sbjct 82 GTACAAAGGGCAGGGACGTAGTCAACGCAAGC-TGATGACTTGCGCTTACTAGGAA-TTC 25 Query 61 CTCGTTGAAGACCAACAATTGCAA 84 ||||||||||| ||| |||| ||| Sbjct 24 CTCGTTGAAGAGCAAAAATTACAA 1 >seq611 Length=183 Score = 113 bits (124), Expect = 7e-23 Identities = 77/84 (92%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| ||| Sbjct 89 GTACAAAGGGCAGGGACGTAGTCAACGCAAGC-TGATGACTTGCGCTTACTAGGAA-TTC 32 Query 61 CTCGTTGAAGACCAACAATTGCAA 84 ||||||||||| ||| |||| ||| Sbjct 31 CTCGTTGAAGAGCAAAAATTACAA 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751981452390