Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq85 280 6e-73 seq418 197 6e-48 seq384 196 2e-47 seq447 158 5e-36 seq1805 156 2e-35 seq475 156 2e-35 seq2049 150 7e-34 seq2286 134 6e-29 seq378 129 2e-27 seq2094 125 3e-26 seq2155 122 4e-25 seq1944 120 1e-24 seq2378 93.3 2e-16 seq2059 87.8 7e-15 seq329 82.4 3e-13 >seq85 Length=507 Score = 280 bits (310), Expect = 6e-73 Identities = 190/212 (90%), Gaps = 7/212 (3%) Strand=Plus/Plus Query 477 AATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCT 536 |||||||||||| |||||||| || | ||||||||||||||||||||| | |||| Sbjct 3 AATGAAAGTGAATTCAGGTGGGATCCGC--AAGGTGCACCATCGACCGATCCTCACGTCT 60 Query 537 TCGGA-----TGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTAT 591 | | |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 61 TTTTAAGTCGTGGATTTGAGTAAGAGCATACCTGTTGGGACCCGAAAGATGGTGAACTAT 120 Query 592 GCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGC 651 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 121 GCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGGTTCTGACGTGC 180 Query 652 AAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||||||||||||||||||||||||| Sbjct 181 AAATCGATCGTCAAATTTGGGTATAGGGGCGA 212 >seq418 Length=183 Score = 197 bits (218), Expect = 6e-48 Identities = 138/157 (88%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 |||||||||||||||||||||||||| ||||||| ||||||| | ||||| |||||||| Sbjct 1 AGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATA 60 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAA 160 |||| |||||||||||||| ||||||| || ||| ||||||||||||| |||||| ||| Sbjct 61 TTGGGGAGAGACCGATAGCGAACAAGTACAGAGATGGAAAGATGAAAAGAACTTTGAAAA 120 Query 161 GAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 |||||||||| || ||||||||||| ||||||||| Sbjct 121 GAGAGTTAAACAGTACGTGAAATTGCCAAAAGGGAAG 157 >seq384 Length=183 Score = 196 bits (216), Expect = 2e-47 Identities = 141/163 (87%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||||| | | ||| | ||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 170 TGTGATACACTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAAT 111 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | ||||| |||||||| ||| |||||||||||||| ||||||| |||||| |||||| Sbjct 110 GCCATCTAAGGCTAAATAGTGGGGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGA 51 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTG 185 ||||||| |||||| ||||||||||||| || ||||||||||| Sbjct 50 TGAAAAGAACTTTGAAAAGAGAGTTAAACAGTACGTGAAATTG 8 >seq447 Length=183 Score = 158 bits (174), Expect = 5e-36 Identities = 131/159 (82%), Gaps = 7/159 (4%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| |||||||||||||||||||||||| ||||||||| |||||||| |||||| Sbjct 158 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATGCGAGTCTTTGGGTGGCAAACC 99 Query 468 CGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATC 527 | | | | |||||||||||| |||||||| || | ||||||||||||||||||| Sbjct 98 CATAGGTGCAATGAAAGTGAATTCAGGTGGGATCC--GCAAGGTGCACCATCGACCGATC 41 Query 528 CTGATGTCTTCGGA-----TGGATTTGAGTAAGAGCATA 561 || | ||||| | |||||||||||||||||||| Sbjct 40 CTCACGTCTTTTTAAGTCGTGGATTTGAGTAAGAGCATA 2 >seq1805 Length=116 Score = 156 bits (172), Expect = 2e-35 Identities = 104/116 (90%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 41 AGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATA 100 |||||||||||||||||||||||||| ||||||| ||||||| | ||||| |||||||| Sbjct 116 AGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATGCCATCTAAGGCTAAATA 57 Query 101 TTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 |||| |||||||||||||| ||||||| |||||| ||||||||||||| |||||| Sbjct 56 TTGGGGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTG 1 >seq475 Length=183 Score = 156 bits (172), Expect = 2e-35 Identities = 115/134 (86%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||||| | | ||| | ||||||||||||||||||||||||| | ||||||| ||||||| Sbjct 134 TGTGATACACTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCGCAAAATGGGTGGTAAAT 75 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | ||||| |||||||||||| |||||||||||||| ||||||| |||||| |||||| Sbjct 74 GCCATCTAAGGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGA 15 Query 143 TGAAAAGCACTTTG 156 ||||||| |||||| Sbjct 14 TGAAAAGAACTTTG 1 >seq2049 Length=127 Score = 150 bits (166), Expect = 7e-34 Identities = 104/118 (88%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 68 AAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGT 127 ||||||| ||||||| | ||||| |||||||||||| |||||||||||||| |||||| Sbjct 3 AAATGGGTGGTAAATGCCATCTAAGGCTAAATATTGGGGAGAGACCGATAGCGAACAAGT 62 Query 128 AGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTG 185 | |||||| ||||||||||||| |||||| ||||||||||||| || ||||||||||| Sbjct 63 ACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAACAGTACGTGAAATTG 120 >seq2286 Length=141 Score = 134 bits (148), Expect = 6e-29 Identities = 101/118 (86%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| |||||||||||||||||||||||| ||||||||| |||||||| |||||| Sbjct 116 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATGCGAGTCTTTGGGTGGCAAACC 57 Query 468 CGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGA 525 | | ||| |||||||||||| |||||||| || | ||||||||||||||||| Sbjct 56 CATAGGCGCAATGAAAGTGAATTCAGGTGGGATCC--GCAAGGTGCACCATCGACCGA 1 >seq378 Length=183 Score = 129 bits (142), Expect = 2e-27 Identities = 100/118 (85%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| |||||||||||||| ||||||||| ||||||||| |||||||| |||||| Sbjct 68 CCCGTCTTGAAACACGGACCAAGGCGTCTAACATGTATGCGAGTCTTTGGGTGGCAAACC 127 Query 468 CGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGA 525 | | ||| |||||||||||| |||||||| || | ||||||||||||||||| Sbjct 128 CATAGGCGCAATGAAAGTGAATTCAGGTGGGATCC--GCAAGGTGCACCATCGACCGA 183 >seq2094 Length=122 Score = 125 bits (138), Expect = 3e-26 Identities = 93/109 (85%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||||| | | ||| | ||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 109 TGTGATACACTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAAT 50 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAG 131 | ||||| |||||||||||| |||||||||||||| ||||||| || Sbjct 49 GCCATCTAAGGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACAG 1 >seq2155 Length=133 Score = 122 bits (134), Expect = 4e-25 Identities = 108/134 (81%), Gaps = 7/134 (5%) Strand=Plus/Minus Query 433 GTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGA 492 ||||||||| ||||||||| |||||||| ||||||| | ||| |||||||||||| | Sbjct 133 GTCTAACATGTATGCGAGTCTTTGGGTGGCAAACCCATAGGCGCAATGAAAGTGAATTCA 74 Query 493 GGTGGGAACCCGTGAGGGTGCACCATCGACCGATCCTGATGTCTTCGGA-----TGGATT 547 ||||||| || | ||||||||||||||||||||| | ||||| | |||||| Sbjct 73 GGTGGGATCC--GCAAGGTGCACCATCGACCGATCCTCACGTCTTTTTAAGTCGTGGATT 16 Query 548 TGAGTAAGAGCATA 561 |||||||||||||| Sbjct 15 TGAGTAAGAGCATA 2 >seq1944 Length=122 Score = 120 bits (132), Expect = 1e-24 Identities = 81/91 (89%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 107 AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166 |||||||||||||| ||||||| |||||| ||||||||||||| |||||| ||||||||| Sbjct 117 AGAGACCGATAGCGAACAAGTACAGTGATGGAAAGATGAAAAGAACTTTGAAAAGAGAGT 58 Query 167 TAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 |||| || ||||||||||| ||||||||| Sbjct 57 TAAACAGTACGTGAAATTGCCAAAAGGGAAG 27 >seq2378 Length=133 Score = 93.3 bits (102), Expect = 2e-16 Identities = 57/61 (93%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| |||||||||||||||||||||||| ||||||||| |||||||| |||||| Sbjct 66 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATGCGAGTCTTTGGGTGGCAAACC 7 Query 468 C 468 | Sbjct 6 C 6 >seq2059 Length=127 Score = 87.8 bits (96), Expect = 7e-15 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||||| | | ||| | ||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 50 TGTGATACACTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAAT 109 Query 83 TTCTTCTAAAGCTAAATA 100 | ||||| |||||||| Sbjct 110 GCCATCTAAGGCTAAATA 127 >seq329 Length=190 Score = 82.4 bits (90), Expect = 3e-13 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 133 GATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAG 192 ||| ||||||||||||| |||||| ||||||||||||| || ||||||||||| |||| Sbjct 190 GATGGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAACAGTACGTGAAATTGCCAAAAG 131 Query 193 GGAAG 197 ||||| Sbjct 130 GGAAG 126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079945388300