Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq2416 73.4 5e-11 >seq2416 Length=13067 Score = 73.4 bits (80), Expect = 5e-11 Identities = 143/205 (70%), Gaps = 11/205 (5%) Strand=Plus/Minus Query 50 CGTCTTCGCACGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCA 109 |||||| ||| | |||||||||| |||||||||||| ||||| ||| | || || Sbjct 5046 CGTCTTAGCAAGTTGCTGTGTTTTTGGTAAACAGTCGCAGCCCTCGATTTTGTGACACT- 4988 Query 110 CCACCAGCTCAACACGTCGTTCACC--AGCAGT---GGCACCCCTTCTCC-CGAAGTTAC 163 || | | || | ||| | || | | | || ||||| || | || |||| Sbjct 4987 -CAGAA--TAAAGGGGGCGTGCGCCCCATCTATTCTGGTTACCCTTATCGTCTAACTTAC 4931 Query 164 GGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACC 223 ||| || |||||||| |||||| || | || | | | ||||||||||||||||||| Sbjct 4930 GGGCACAATTTGCCGAGTTCCTTCACAAGCATTATCTCTA-CGCCTTAGTATTCTCTACC 4872 Query 224 TGACCACCTGTGTCGGTTTACGGTA 248 | ||||||||||||||| |||| Sbjct 4871 TACGAACCTGTGTCGGTTTAGGGTA 4847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694382873058