Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq42 295 1e-77 >seq42 Length=1514 Score = 295 bits (326), Expect = 1e-77 Identities = 225/264 (85%), Gaps = 9/264 (3%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || ||| ||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct 63 ACTCGTTGTCTCTGTCAGTGTAGCGCGCGTGCAGCCCGGAACATCTAAGGGCATCACAGA 122 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC-CAATAGTCCCTCTAAGAAGCCA-- 118 ||||||||||||| | ||||| || || | | || |||||||||||||| || Sbjct 123 CCTGTTATTGCCTTTTGCCTCCATCACCTAGACGGTCGATTGTCCCTCTAAGAAGACATA 182 Query 119 ----GCCACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCG 174 |||| ||| || ||| | | ||||||||||||| ||||||||||||||||||| Sbjct 183 AGGGGCCAACAA--ATTGTCAACCCGTCTATTTAGCAGGTCAAGGTCTCGTTCGTTATCG 240 Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAA 300 Query 235 TCAAGAAAGAGCTATCAATCTGTC 258 ||| ||||| || ||||||||||| Sbjct 301 TCATGAAAGCGCCATCAATCTGTC 324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796780347426