Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq2017 324 2e-86 seq411 246 5e-63 seq455 241 2e-61 seq2156 208 1e-51 seq1179 205 2e-50 seq1377 100 5e-19 seq1586 80.6 5e-13 >seq2017 Length=182 Score = 324 bits (358), Expect = 2e-86 Identities = 181/182 (99%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 60 Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 120 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 180 Query 239 CT 240 || Sbjct 181 CT 182 >seq411 Length=183 Score = 246 bits (272), Expect = 5e-63 Identities = 142/146 (97%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 183 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 124 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| Sbjct 123 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATGCCGAGGATCTAAAGGATCGATAG 64 Query 270 GCCACACTTTCATGGTTTGTATTCAC 295 |||||||||||||||||||||||||| Sbjct 63 GCCACACTTTCATGGTTTGTATTCAC 38 >seq455 Length=183 Score = 241 bits (266), Expect = 2e-61 Identities = 141/146 (97%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 60 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 ||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| Sbjct 61 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTAAAATGCCGAGGATCTAAAGGATCGATAG 120 Query 270 GCCACACTTTCATGGTTTGTATTCAC 295 |||||||||||||||||||||||||| Sbjct 121 GCCACACTTTCATGGTTTGTATTCAC 146 >seq2156 Length=183 Score = 208 bits (230), Expect = 1e-51 Identities = 137/150 (91%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCA-TCAGTAGGGTAAAACTAACCTGTCTC 59 ||||||| ||||||| || | || ||| |||||||||||||||||||||||||| Sbjct 150 TACTAAGTTGAATTACTGTTACGATAACCCTCAATCAGTAGGGTAAAACTAACCTGTCTC 91 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 90 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 31 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||||||| Sbjct 30 AATTCTGCTTCGGTATGATAGGAAGAGCCG 1 >seq1179 Length=183 Score = 205 bits (226), Expect = 2e-50 Identities = 136/150 (91%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCA-TCAGTAGGGTAAAACTAACCTGTCTC 59 ||||||| ||||||| || | || ||| |||||||||||||||||||||||| | Sbjct 34 TACTAAGTTGAATTACTGTTACGATAACCCTCAATCAGTAGGGTAAAACTAACCTGTCCC 93 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 94 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 153 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||||||| Sbjct 154 AATTCTGCTTCGGTATGATAGGAAGAGCCG 183 >seq1377 Length=33905 Score = 100 bits (110), Expect = 5e-19 Identities = 58/60 (97%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct 16156 CGAATTCTGCTTCGATATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCATCGTCGC 16097 >seq1586 Length=172 Score = 80.6 bits (88), Expect = 5e-13 Identities = 50/54 (93%), Gaps = 0/54 (0%) Strand=Plus/Plus Query 242 AAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 |||| ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAATGCCGAGGATCTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854378246976