Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq629 214 3e-53 seq379 214 3e-53 seq42 203 6e-50 seq611 114 2e-23 seq2542 111 3e-22 >seq629 Length=176 Score = 214 bits (236), Expect = 3e-53 Identities = 151/173 (87%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 156 CGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATC 215 |||||||||||||||||||| |||||||| || ||||| ||| || | |||||||| | Sbjct 176 CGCGCGCTACACTGACAGAGACAACGAGTGGTTCCCCTTGTCCGAAATGACTGGGTAAAC 117 Query 216 TTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAAT 275 |||| ||||| ||||||||||||||| |||| ||| |||| ||||||||||||||||||| Sbjct 116 TTGTGAAACTTTGTCGTGCTGGGGATGGAGCTTTGTAATTTTTGCTCTTCAACGAGGAAT 57 Query 276 GCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||||||||| ||||||||| ||||||| ||||||||||||||||||| Sbjct 56 TCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGACTACGTCCCTGCCCTTTGTA 4 >seq379 Length=183 Score = 214 bits (236), Expect = 3e-53 Identities = 151/173 (87%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 156 CGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATC 215 |||||||||||||||||||| |||||||| || ||||| ||| || | |||||||| | Sbjct 1 CGCGCGCTACACTGACAGAGACAACGAGTGGTTCCCCTTGTCCGAAATGACTGGGTAAAC 60 Query 216 TTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAAT 275 |||| ||||| ||||||||||||||| |||| ||| |||| ||||||||||||||||||| Sbjct 61 TTGTGAAACTTTGTCGTGCTGGGGATGGAGCGTTGTAATTTTTGCTCTTCAACGAGGAAT 120 Query 276 GCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||||||||| ||||||||| ||||||| ||||||||||||||||||| Sbjct 121 TCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGACTACGTCCCTGCCCTTTGTA 173 >seq42 Length=1514 Score = 203 bits (224), Expect = 6e-50 Identities = 188/235 (80%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGC--TTTGGCGGGTCGCC----GGCT 73 || ||||||||| ||||||||||||| | || | |||| || | || | || Sbjct 233 GAACGAGACCTTGACCTGCTAAATAGACGGGTTGACAATTTGTTGG--CCCCTTATGTCT 176 Query 74 TCTTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 |||||||||||| |||| | || || |||||| | |||||||||||||||||||| Sbjct 175 TCTTAGAGGGACAATCGACCGTCTAGGTGATGGAGGCAAAAGGCAATAACAGGTCTGTGA 116 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||||| |||| ||||||||||||||||||||||| |||||||| || | Sbjct 115 TGCCCTTAGATGTTCCGGGCTGCACGCGCGCTACACTGACAGAGACAACGAGTGGTTCCC 56 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 |||| ||| || | |||||||| ||||| ||||| ||||||||||||||| |||| Sbjct 55 CTTGTCCGAAATGACTGGGTAAACTTGTGAAACTTTGTCGTGCTGGGGATGGAGC 1 >seq611 Length=183 Score = 114 bits (126), Expect = 2e-23 Identities = 77/86 (90%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 243 GAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACG 302 |||| ||| |||| ||||||||||||||||||| |||||||||||| ||||||||| | Sbjct 3 GAGCTTTGTAATTTTTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTG 62 Query 303 CGTTGATTACGTCCCTGCCCTTTGTA 328 |||||| ||||||||||||||||||| Sbjct 63 CGTTGACTACGTCCCTGCCCTTTGTA 88 >seq2542 Length=176 Score = 111 bits (122), Expect = 3e-22 Identities = 73/81 (90%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 248 TTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTG 307 ||| |||| ||||||||||||||||||| |||||||||||| ||||||||| |||||| Sbjct 1 TTGTAATTTTTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTG 60 Query 308 ATTACGTCCCTGCCCTTTGTA 328 | ||||||||||||||||||| Sbjct 61 ACTACGTCCCTGCCCTTTGTA 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947175884288