Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq134 334 2e-89 seq462 331 3e-88 seq1016 325 1e-86 seq1357 223 1e-55 seq409 181 3e-43 seq382 176 1e-41 seq1586 143 9e-32 >seq134 Length=318 Score = 334 bits (370), Expect = 2e-89 Identities = 270/325 (83%), Gaps = 10/325 (3%) Strand=Plus/Minus Query 95 CTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGCGAAG---GACCTTAACGCCAG 151 ||||||||||||||||||| || |||||| | ||| | |||| ||| Sbjct 318 CTCCCCACCTGACAATGTCTCGAATTCGGATCAAGC----AAGTTTGCTTTTAAGTCCAA 263 Query 152 AAAATGGTCGGTGAAGACCAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAG 211 || ||| || || |||| ||||||||||| |||||||| | ||||| ||||| Sbjct 262 AACGTGGGTCGTTAAACCCAGCTCCGCTTCATTCGATAAGTAAAGAGACGATGGAGGTAG 203 Query 212 TGGTATTTCACTTGCGCCGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCAC 271 ||||||||||| |||||||| |||||||||||| ||||||| || ||| ||||| Sbjct 202 TGGTATTTCACCGGCGCCGAA---GCTCCCACTTATCCTACACCCTCCATGTCTCTTCAC 146 Query 272 AAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCC 331 || ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 145 AATGTCAAACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTTTGCCAAGCCC 86 Query 332 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 85 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCC 26 Query 392 ATTCATGCGCGTCACTAATTAGATG 416 ||||||||||||||||||||||||| Sbjct 25 ATTCATGCGCGTCACTAATTAGATG 1 >seq462 Length=183 Score = 331 bits (366), Expect = 3e-88 Identities = 183/183 (100%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 326 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 60 Query 386 TAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTC 445 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTC 120 Query 446 ATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGC 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGC 180 Query 506 ACT 508 ||| Sbjct 181 ACT 183 >seq1016 Length=183 Score = 325 bits (360), Expect = 1e-86 Identities = 182/183 (99%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 326 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 385 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 60 Query 386 TAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTC 445 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 61 TAATCCATTCATGCGCGTCACTAATTAGATGCCGAGGCATTTGGCTACCTTAAGAGAGTC 120 Query 446 ATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGC 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 ATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGC 180 Query 506 ACT 508 ||| Sbjct 181 ACT 183 >seq1357 Length=227 Score = 223 bits (246), Expect = 1e-55 Identities = 125/126 (99%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 418 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 227 CGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGT 168 Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCAC 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 167 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACACCAC 108 Query 538 TTTCTG 543 |||||| Sbjct 107 TTTCTG 102 >seq409 Length=183 Score = 181 bits (200), Expect = 3e-43 Identities = 112/120 (93%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATC 120 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 119 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTCGAATTCGGATC 60 >seq382 Length=183 Score = 176 bits (194), Expect = 1e-41 Identities = 111/120 (93%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATC 120 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||||||||||||||||||||||||||| ||||||||||||||||||| || |||||| Sbjct 119 GTTTAACAGATGTGCCGCCCCAGCCAAGCTCCCCACCTGACAATGTCTCGAATTCGGATC 60 >seq1586 Length=172 Score = 143 bits (158), Expect = 9e-32 Identities = 84/87 (97%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 86 CTTTTGTTCTACTGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATC 145 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAA 93 ||||||||||||||||||||||||||| Sbjct 146 GTTTAACAGATGTGCCGCCCCAGCCAA 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635158367808