Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20bromivora_20[genbank_20GCA_5F900101485.1_202016-11-05] 2,546 sequences; 20,775,628 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1109 329 3e-85 seq1432 197 1e-45 >seq1109 Length=147467 Score = 329 bits (364), Expect = 3e-85 Identities = 830/1239 (67%), Gaps = 46/1239 (4%) Strand=Plus/Plus Query 65719 CTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATC 65778 |||||| ||||| ||| ||||||||||| || | || | ||| |||||| Sbjct 96395 CTCGAGAGCGGCGTGATAGATGGTCTCGAAGATCTGCACGTTCAAACGACGCGCCTCAGG 96454 Query 65779 GCTCTCGTACGGCATA-CCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATAC 65837 | |||| | |||||| ||||| | | || | ||||| ||||| ||||| || |||| Sbjct 96455 GGACTCGAA-GGCATAACCCATGATCATGAATGCATCGGCGAGACCCTGAACACCGATAC 96513 Query 65838 CGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATAT 65897 |||||||||| ||||||| ||||| || | || || || |||||||| ||||| | Sbjct 96514 CGATGGGACGGTGACGCATGTTGGATCGACGAGCTTCTTCAACGGGGTAGTAGTTGATGT 96573 Query 65898 CGATAATGCGATTCAAATTGCGTGTCACCACATGCAC---GATACGTC--GCAATTGTTC 65952 |||| || ||||| || | || || ||| | || || ||| | | Sbjct 96574 CGATGATCTTGTTCAAGTT-CTTG----CAGATGGCTTTGGCGACCTCATGCAGACGCTT 96628 Query 65953 GAAATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAG 66012 |||||| | || | | | | | || | || |||| ||||| | Sbjct 96629 GAAATCGTAGACCTTGGTAACA------GGGTCG------ATGAAGGTGGGGAGGGCGAT 96676 Query 66013 AGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCA 66072 || || | |||||||||||| | ||| || || || | ||||||| ||||||||||| Sbjct 96677 GGAGGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCA 96736 Query 66073 CAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATT-GCATGCAT 66131 || || ||| ||||| || | |||| || || |||||| || ||| || | Sbjct 96737 GAGGTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCA-GCGT 96795 Query 66132 CCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAA 66191 ||||||| | ||| | ||| | |||||||| || ||||| | |||||||| ||| | Sbjct 96796 CCTTGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGA 96855 Query 66192 GAGCGCGTGCCTTCACCGTACG--TACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAG 66249 | | ||||| || || || ||| || | ||| || | |||| | |||||||| Sbjct 96856 GCTTCTGGGCCTTGACGGTTCGCTTACAGCG-TCCCTCAGCCT-CGTAGCGCTCGTAGAG 96913 Query 66250 GTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAG 66309 | || || ||||| | |||| || | || |||| || || ||||| || Sbjct 96914 ACGCTCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTAGGGCACATGAG 96973 Query 66310 CGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTA 66369 ||||||||| |||| ||| || || | ||| || ||||| || | ||| || ||||| Sbjct 96974 CGACCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTA 97033 Query 66370 GAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTC 66429 |||||| || || || || ||||| | ||||| || |||||||||||||||||||| Sbjct 97034 GAAGAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTC 97093 Query 66430 AAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCC 66489 |||| || | ||||| || || | |||||| || || | || ||| ||| || Sbjct 97094 GAAGACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGACGCTTGTTACC 97153 Query 66490 ACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTT 66549 ||||||||||||||| ||||| |||||||||||||| | ||| || |||| ||||| Sbjct 97154 ACCTTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTT 97213 Query 66550 AGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC-CGTATATCGTGAACATTCA 66608 || ||||| ||| | ||| || || || || || || ||| | || | Sbjct 97214 GCTGACACCGTTGGTACCGGCAATGTAAGAGCC-GGTACCACGAATGCAGTGGATGTTGA 97272 Query 66609 GACCAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATAT 66666 |||| ||||||||||| ||||| ||||| ||||| || | |||| | | || Sbjct 97273 GACCGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTC--GTAGAT 97330 Query 66667 GCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGG 66726 ||||| || |||||| |||| ||||| | ||| | || || || || || | ||| Sbjct 97331 CCCGTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGG 97390 Query 66727 TGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATT 66786 || |||| |||||| || || | || || |||||||| | | |||||| || Sbjct 97391 GGTACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGACATGAGGTT 97450 Query 66787 GTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC-ACATCGCATCA 66845 ||||||||| || || ||||||| | ||| ||||| |||| || ||| ||||| | Sbjct 97451 GTACGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCGACA-CGCATGA 97509 Query 66846 GGAGGTATTGAGGCCGTT---CGACC-AGCCGATCCTTGATATGCATTAAGTAGGAGCGT 66901 | || || || || | ||||| |||| |||||| | | |||||||| || Sbjct 97510 TCATGTGCTGGGGACGCTCAGCGACCTTGCCG----TTGATACGGAGCAAGTAGGATCGC 97565 Query 66902 TCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCG 66940 || |||||||||| ||| ||| | ||| | ||| ||| Sbjct 97566 TCGAGGGTCTTGAAACCGAAGAAGTTGTAGTGGAAGTCG 97604 >seq1432 Length=176812 Score = 197 bits (218), Expect = 1e-45 Identities = 382/557 (69%), Gaps = 9/557 (2%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || |||||||||||||| | ||||| |||| | Sbjct 172336 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAAATCGACCTC 172395 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| | | |||||||| | | | ||| | || | || ||||| Sbjct 172396 TCCAAGGACCTTCACGACTGGGACAACAAGCTCAACGA-CAACGAGCGTCACTTCATCTC 172454 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || | || ||||| |||||||| |||||||||||||| ||||| | | || || Sbjct 172455 TCACGTCCTTGCCTTCTTCGCCGCTTCTGACGGTATCGTCAACGAGAACCTCGTCGAGCG 172514 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| ||||| || | | || || || || |||||||| |||||||| || Sbjct 172515 CTTCAGTTCCGAGGTCCAGGCCGCCGAAGCCCGATGCTTCTACGGTTTCCAGATCATGAT 172574 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| ||||||| || | ||| | |||||||| || |||||| | |||| | Sbjct 172575 GGAGAACATCCACTCCGAAACCTACTCGCTCCTCATCGACACCTACATCCGCGAGCCCGA 172634 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | | || || | || | ||| ||||||| || || | || ||| ||| || || Sbjct 172635 GCAGCGCGAGTTTCTCTTTGACGCCGTCGAGACTATCCCCGTCGTCAAGAAGAAGGCCGA 172694 Query 61443 TTGGGCC-TTCAATTGGATCACC-AGTACAACGGCTACATTTGGTGAACGATTGCTGGCA 61500 |||||| ||| || |||||| | | ||| ||| || || | ||| || | | || Sbjct 172695 ATGGGCCCTTCGAT-GGATCAACGACCGCAA-GGCCACCTTCGCTGAGCGTCTCGTTGCC 172752 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560 ||||| | ||||| ||| | || ||| || || |||||| | ||||| ||| | ||| Sbjct 172753 TTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCTTTGCCTCGATCTTCTGGCTCAAG 172812 Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620 || || || || ||||||||||| |||||| ||| ||| | || || || |||||||| Sbjct 172813 AAGCGCGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGT 172872 Query 61621 ATGCATTGTGATTTTGC 61637 | || |||||||| Sbjct 172873 CTTCACACCGATTTTGC 172889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397555663713440