Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25]
15,584 sequences; 24,384,713 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq1295 333 5e-89
seq50 102 1e-19
seq63 78.8 2e-12
>seq1295
Length=957
Score = 333 bits (368), Expect = 5e-89
Identities = 206/219 (94%), Gaps = 1/219 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCA-TCAGTAGGGTAAAACTAACCTGTCTC 59
||||||| ||||||| || | || ||| ||||||||||||||||||||||||||
Sbjct 230 TACTAAGTTGAATTACTGTTACGATAACCCTCAATCAGTAGGGTAAAACTAACCTGTCTC 289
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 349
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 409
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218
|||||||||||||||||||||||||||||||||||||||
Sbjct 410 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 448
Score = 125 bits (138), Expect = 1e-26
Identities = 75/79 (95%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 217 TAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACAC 276
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 853 TAACTTTTCTGGCACCTCTAGCCTCAAATGCCGAGGATCTAAAGGATCGATAGGCCACAC 912
Query 277 TTTCATGGTTTGTATTCAC 295
|||||||||||||||||||
Sbjct 913 TTTCATGGTTTGTATTCAC 931
>seq50
Length=68733
Score = 102 bits (112), Expect = 1e-19
Identities = 59/61 (97%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118
|| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 52 CAAGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAATGCTTACC 111
Query 119 G 119
|
Sbjct 112 G 112
>seq63
Length=61970
Score = 78.8 bits (86), Expect = 2e-12
Identities = 46/48 (96%), Gaps = 0/48 (0%)
Strand=Plus/Plus
Query 248 CGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295
||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 32340 CGAGGATCTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 32387
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854266850304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |