Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1295 333 5e-89 seq50 102 1e-19 seq63 78.8 2e-12 >seq1295 Length=957 Score = 333 bits (368), Expect = 5e-89 Identities = 206/219 (94%), Gaps = 1/219 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCA-TCAGTAGGGTAAAACTAACCTGTCTC 59 ||||||| ||||||| || | || ||| |||||||||||||||||||||||||| Sbjct 230 TACTAAGTTGAATTACTGTTACGATAACCCTCAATCAGTAGGGTAAAACTAACCTGTCTC 289 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 290 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 349 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 350 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 409 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 218 ||||||||||||||||||||||||||||||||||||||| Sbjct 410 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTA 448 Score = 125 bits (138), Expect = 1e-26 Identities = 75/79 (95%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 217 TAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACAC 276 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 853 TAACTTTTCTGGCACCTCTAGCCTCAAATGCCGAGGATCTAAAGGATCGATAGGCCACAC 912 Query 277 TTTCATGGTTTGTATTCAC 295 ||||||||||||||||||| Sbjct 913 TTTCATGGTTTGTATTCAC 931 >seq50 Length=68733 Score = 102 bits (112), Expect = 1e-19 Identities = 59/61 (97%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 59 CATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACC 118 || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 52 CAAGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAATGCTTACC 111 Query 119 G 119 | Sbjct 112 G 112 >seq63 Length=61970 Score = 78.8 bits (86), Expect = 2e-12 Identities = 46/48 (96%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 248 CGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 32340 CGAGGATCTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 32387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854266850304