Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001676635.1_202016-06-25] 15,584 sequences; 24,384,713 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq97 313 2e-80 seq539 224 8e-54 >seq97 Length=50192 Score = 313 bits (346), Expect = 2e-80 Identities = 1203/1855 (65%), Gaps = 66/1855 (4%) Strand=Plus/Minus Query 65084 GTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTGAGG 65143 |||||||| | || || | || | |||||| | ||| ||||| | ||||||||||| Sbjct 19686 GTGAACTGAACAGCGTTGGATGCTGGCTTGGTACGAAGGTAGTAGGTACCGGTCTTGAGA 19627 Query 65144 CCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCCACA 65203 || |||| | ||||| |||||||| | || | | || | || | | || Sbjct 19626 CCCTTCTTCCAACCGTAGAAGTGCATCGAAGTCAACTGACCGAAAGTGGGAGCCGACAAG 19567 Query 65204 TGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATG 65263 || || || | ||| ||| ||| ||| || ||| || || || |||||||| ||| Sbjct 19566 TGGATGTTGAGCGATTGAGACTGGCAAATGAAAGCACCTCGGTCAGCGGCCATGTCGATG 19507 Query 65264 ATACGACGTCCCG-ATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATTGGA-A 65321 ||| | | || | | |||||||| || |||||||| || | | | | | || | Sbjct 19506 ATA-GCCTTCTGGGAGATCTCCCAAACAGTCTTGTAGAG-CTTCTTGATACGGTCGGGGA 19449 Query 65322 TCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGACTCTG 65381 | | || || ||||| ||||||| | || || || || || ||| | || Sbjct 19448 TACCAGGAACGTTCTGGATGGAACCACCGTGAGCGATGATACGGTTCTTCATTGTGTCGT 19389 Query 65382 ACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAACTCGC 65441 |||||| ||| || | || | | | ||| | | |||| ||| ||||| || | Sbjct 19388 TCCACAATCCCTGCTCAACGAGTTCGCGGAGCAACCAAGGGTTGACGACCTGGAATTCAC 19329 Query 65442 CGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGC 65501 | | || |||||||| ||||||||||| ||| ||| || || |||| || | Sbjct 19328 CAGCGAGGACACGACGAGAGTAGATGTTGGAGGTGTAGGGCTCGAAACATTCGTTGAAAC 19269 Query 65502 CTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCAATC 65561 | | || || |||||||| || ||||||||||||| ||| | ||||| || | | Sbjct 19268 CCAAGATCTGACTTGTAGATGCGGTAGGCATGGGAGCGAGCAAGAGCGAGTTGCGGAGAC 19209 Query 65562 CGTTCATTTCAATGTTG----TGACGCAATTCGTCCCAGTTCCACA--TCGGTTTATCGT 65615 ||| | | | || ||| ||| || | |||||| ||| | |||| || Sbjct 19208 CGTGCTTGGCGATCTTGGCCTTGAGGCTAG----CCCAGTCCCAAAGATCGGAAGGA-GT 19154 Query 65616 CGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGG----CCGGTGAACCG 65671 |||| || ||||| || | || || ||| | |||| | || || ||| Sbjct 19153 -GACACCC------CACATGTCGTACTGGAG--TTC--ACCCTGGGAAGCAGGAGAGCCG 19105 Query 65672 AGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA-GCTGGTCTCGAGTGCGGC 65730 | | | ||||| || | ||| | || | | || | | | ||| || ||||| Sbjct 19104 GCGTAGGTCTCGTAGGTGCCGTGCTCTTGAGCCAACTCGCACGATCG-CTCAAGAGCGGC 19046 Query 65731 AAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCAT-CGCTCTCGTACG 65789 | || ||||||||||| || | || | | ||| ||||| || | ||| | | Sbjct 19045 ATGGTAGATGGTCTCGAAGATCTGGACGTTCAATCGACGAGCCTCGGGCGAT-TCGAA-G 18988 Query 65790 GCATA-CCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGA 65848 || || ||||| | | || | ||||| ||||| ||||| || |||||||| || || Sbjct 18987 GCGTAACCCATGATCATGAAGGCATCGGCAAGACCCTGAACACCGATACCGATAGGGCGG 18928 Query 65849 TGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGA 65908 ||||||| || ||||| | ||||| ||||||||||| ||||| ||||| || Sbjct 18927 TGACGCATGTTAGAACGACGAGCCTCCTCAACAGGGTAGTAGTTGATGTCGATGATCTTG 18868 Query 65909 TTCAAATTGCGTGTCACCACATGCACGATA--CGTCGCAA--TTGTTCGAAATCAAAATG 65964 ||||| || | |||| |||| | | |||| | || | || | || Sbjct 18867 TTCAAGTT-----------CTTGCA-GATAGCCTTGGCAACCTCGTGCAAACGCT---TG 18823 Query 65965 TTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTT 66024 | | || | | ||| | | | | || ||||||| || | || || ||||| Sbjct 18822 TAGTCGTAGACCTTG-GTGACAGGGTCGATGAAGGTGGGAAGAGCGATGGAGGCAAGGTT 18764 Query 66025 GCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCA 66084 ||| ||||| | ||| || ||||| | ||||||| || || ||||||| || ||| Sbjct 18763 GCAAACAGCAACCTCATCGGGAGCACTGTACTCGATGATCTCAGTGCACAAGTTGGAGCA 18704 Query 66085 GCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCAT 66144 || || || | |||| || || |||||| ||| || |||||||| | || Sbjct 18703 CTTGATAGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGGAT 18644 Query 66145 GTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTT 66204 | | || | || ||||| || ||||| | |||||||| ||| || | ||||| Sbjct 18643 GAAGGGGTTACCAGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTT 18584 Query 66205 CACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTC 66264 || || || | | ||||| |||||| | |||||||| | || || || Sbjct 18583 GACGGTGCGCTTGGAACGACCTTCAGCCTCGTAACGCTCGTAGAGACGCTCAAACTCCTC 18524 Query 66265 ACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATC 66324 ||| | || | |||| || |||| || || ||||| |||||||| || || | Sbjct 18523 ACCGTAGCAGTCAGCGAGACCGGGGCACTCGTTGGGGCACATGAGCGACCATTCGCCGTT 18464 Query 66325 CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGC 66384 ||| || || | ||| || ||||| || | |||||| ||||||||||| || || || Sbjct 18463 CTGCTCAACCCTCTTCATGAAGAGATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGC 18404 Query 66385 TCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATG 66444 || || || | ||||| || ||||||||||||||||||||||||| || | || Sbjct 18403 ACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTG 18344 Query 66445 CCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTA 66504 ||| || || | ||||||||| || | || ||| ||| ||||| ||||||||||| Sbjct 18343 CCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCGACGTA 18284 Query 66505 GCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGT 66564 || ||| |||||||||||||| | ||| || |||| ||||| || ||||| Sbjct 18283 ACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAACGATACCGTTGCTGACACCGTTGGT 18224 Query 66565 GCCGTCGATGGGGGATCCTCGTGCC-CGTATATCGTGAACATTCAGACCAATACCACCGG 66623 |||| | ||| || || || || || || ||||| |||| |||||| || |||| Sbjct 18223 GCCGGCAATGTACGAGCC-AGTACCTCGAATGCAGTGAATGTTCAAACCAATGCCGCCGG 18165 Query 66624 CCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAGTC 66681 | ||||| ||||| ||||| || | |||| | | ||||| || || ||||| Sbjct 18164 CGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTC--GTAAATGCCATCGATCGAGTC 18107 Query 66682 ACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAA 66741 | |||| |||| | ||| | || || || || || | ||| ||| | || ||| Sbjct 18106 ATCCTTCATGGCAACAAGGAAACAGGACGAGAGCTGAGGATGGGGAGTGCCAGCGTTGAA 18047 Query 66742 GAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGAC 66801 |||||| || | ||||| |||||||| | | |||||| ||||| |||||||| | Sbjct 18046 GAGGGTTGGCGAGGCGTGAGTAAAGTACTTTTGCGACATGAGGTTGTAAGTCTCGATAGC 17987 Query 66802 AGCATCAATGTTTTCGCCATGAATCCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCC 66860 | || |||| | ||| ||||| || | || ||| ||||| || | || || || | Sbjct 17986 ACTCTCGATGTCCTGGCCGTGAATACCAACAGCGACA-CGCATGAGCATGTGCTGGGGAC 17928 Query 66861 GTTCGACCAGCCGATCC-TTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGA 66914 | || | || || || ||||| | | |||||||| || || || ||||||| Sbjct 17927 GCTC-AGCAACCTTGCCGTTGATGCGGAGCAAGTAGGAACGCTCGAGAGTCTTGA 17874 >seq539 Length=9559 Score = 224 bits (248), Expect = 8e-54 Identities = 373/537 (69%), Gaps = 5/537 (1%) Strand=Plus/Plus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || |||||||||||||| | |||||| |||| | Sbjct 5531 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATCGACCTC 5590 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| | |||||||||| | | | ||| | || | || ||||| Sbjct 5591 TCCAAGGACCTTCATGACTGGGACAACAAGCTCAACGA-CAACGAGCGTCACTTCATCTC 5649 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || | || ||||| || ||||| || ||||||||||| ||||| | | || || Sbjct 5650 CCACGTCCTCGCCTTCTTCGCTGCTTCCGATGGTATCGTCAACGAGAACCTCGTCGAGCG 5709 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 |||| ||||| || | | ||||| || || |||||||| |||||||| || Sbjct 5710 TTTCAGTTCCGAGGTTCAGGCTGCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGAT 5769 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| ||||||| |||| || |||||||||| || |||||| | |||| | Sbjct 5770 GGAGAACATCCACTCCGAGACCTATTCGCTTCTCATCGACACTTACATCCGTGAGCCCGA 5829 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | | || ||| | || | ||| |||| || || |||| || |||| ||| || || Sbjct 5830 GCAGCGCGAATTCCTCTTTGACGCCGTCGAAACCATCCCGGTCGTCAAGCAGAAGGCTGA 5889 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATT 61502 |||||| || ||||| | | || ||| || |||| || || | | || || Sbjct 5890 CTGGGCCCTCCGCTGGATTAGCGACCGAAAGGCCACCTTTGCAGAGCGTCTCGTTGCCTT 5949 Query 61503 TGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAA 61562 ||||| || |||||| | || ||| || || || ||| | ||||| ||| | ||||| Sbjct 5950 TGCGGCCGTAGAGGGTATCTTCTTCTCCGGTTCTTTCGCCTCTATCTTCTGGCTCAAGAA 6009 Query 61563 ACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 ||||| || ||||||||||| |||||| ||| ||| | || || ||||||||||| Sbjct 6010 GCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGG 6066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397492489909760