Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq2092 208 3e-51 seq2241 147 9e-33 seq603 109 2e-21 >seq2092 Length=432 Score = 208 bits (230), Expect = 3e-51 Identities = 151/175 (86%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||||| | | ||| | ||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 237 TGTGATACACTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAAT 296 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | ||||| |||||||||||| |||||||||||||| ||||||| |||||| |||||| Sbjct 297 GCCATCTAAGGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGA 356 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||||||| |||||| ||||||||||||| || ||||||||||| ||||||||| Sbjct 357 TGAAAAGAACTTTGAAAAGAGAGTTAAACAGTACGTGAAATTGCCAAAAGGGAAG 411 >seq2241 Length=409 Score = 147 bits (162), Expect = 9e-33 Identities = 111/130 (85%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| |||||||||||||||||||||||| ||||||||| |||||||| |||||| Sbjct 280 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATGCGAGTCTTTGGGTGGCAAACC 339 Query 468 CGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATC 527 | | ||| |||||||||||| |||||||| || | ||||||||||||||||||| Sbjct 340 CATAGGCGCAATGAAAGTGAATTCAGGTGGGATCC--GCAAGGTGCACCATCGACCGATC 397 Query 528 CTGATGTCTT 537 || | ||||| Sbjct 398 CTCACGTCTT 407 >seq603 Length=7591 Score = 109 bits (120), Expect = 2e-21 Identities = 104/130 (80%), Gaps = 6/130 (5%) Strand=Plus/Minus Query 462 CAAACCCGTGCGCG-TAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCG 520 ||| ||| | |||| | |||||||| |||||||| || | | |||||||||||| Sbjct 129 CAAGCCCATACGCGCTCTTGAAAGTGGGTTCAGGTGGGATCC-GCAAAGGTGCACCATCG 71 Query 521 ACCGATCCTGATGTCTTCGGA----TGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGA 576 ||||||||| | ||||| | |||||||||||||||||||| |||||||||||||| Sbjct 70 ACCGATCCTCACGTCTTTTAAGTCGTGGATTTGAGTAAGAGCATACCTGTTGGGACCCGA 11 Query 577 AAGATGGTGA 586 |||||||||| Sbjct 10 AAGATGGTGA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079801651850