Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq5347 389 7e-106 seq1552 268 2e-69 seq1853 165 1e-38 seq43 116 6e-24 seq81 78.8 2e-12 >seq5347 Length=251 Score = 389 bits (430), Expect = 7e-106 Identities = 221/225 (98%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 60 Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 120 Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA 250 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 121 CTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATGCCGA 180 Query 251 GGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 || ||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GGATCTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 225 >seq1552 Length=657 Score = 268 bits (296), Expect = 2e-69 Identities = 148/148 (100%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 60 Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 120 Query 191 CTGCCACAAGCCAGTTATCCCTGTGGTA 218 |||||||||||||||||||||||||||| Sbjct 121 CTGCCACAAGCCAGTTATCCCTGTGGTA 148 Score = 125 bits (138), Expect = 1e-26 Identities = 75/79 (95%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 217 TAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACAC 276 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 553 TAACTTTTCTGGCACCTCTAGCCTCAAATGCCGAGGATCTAAAGGATCGATAGGCCACAC 612 Query 277 TTTCATGGTTTGTATTCAC 295 ||||||||||||||||||| Sbjct 613 TTTCATGGTTTGTATTCAC 631 >seq1853 Length=507 Score = 165 bits (182), Expect = 1e-38 Identities = 113/126 (90%), Gaps = 1/126 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCA-TCAGTAGGGTAAAACTAACCTGTCTC 59 ||||||| ||||||| || | || ||| |||||||||||||||||||||||||| Sbjct 126 TACTAAGTTGAATTACTGTTACGATAACCCTCAATCAGTAGGGTAAAACTAACCTGTCTC 67 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 66 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 7 Query 120 AATTCT 125 |||||| Sbjct 6 AATTCT 1 >seq43 Length=69365 Score = 116 bits (128), Expect = 6e-24 Identities = 67/69 (97%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTCCTTC 60 Query 131 GGTATGATA 139 |||||||| Sbjct 61 AGTATGATA 69 >seq81 Length=54945 Score = 78.8 bits (86), Expect = 2e-12 Identities = 46/48 (96%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 248 CGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 295 ||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 3345 CGAGGATCTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCAC 3392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854320993632