Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20cynodontis_20[genbank_20GCA_5F001736195.1_202016-09-20] 9,247 sequences; 22,572,307 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq97 313 2e-80 seq544 224 8e-54 >seq97 Length=49960 Score = 313 bits (346), Expect = 2e-80 Identities = 1203/1855 (65%), Gaps = 66/1855 (4%) Strand=Plus/Minus Query 65084 GTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTCTTGAGG 65143 |||||||| | || || | || | |||||| | ||| ||||| | ||||||||||| Sbjct 19671 GTGAACTGAACAGCGTTGGATGCTGGCTTGGTACGAAGGTAGTAGGTACCGGTCTTGAGA 19612 Query 65144 CCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTCGGCCACA 65203 || |||| | ||||| |||||||| | || | | || | || | | || Sbjct 19611 CCCTTCTTCCAACCGTAGAAGTGCATCGAAGTCAACTGACCGAAAGTGGGAGCCGACAAG 19552 Query 65204 TGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATG 65263 || || || | ||| ||| ||| ||| || ||| || || || |||||||| ||| Sbjct 19551 TGGATGTTGAGCGATTGAGACTGGCAAATGAAAGCACCTCGGTCAGCGGCCATGTCGATG 19492 Query 65264 ATACGACGTCCCG-ATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATTGGA-A 65321 ||| | | || | | |||||||| || |||||||| || | | | | | || | Sbjct 19491 ATA-GCCTTCTGGGAGATCTCCCAAACAGTCTTGTAGAG-CTTCTTGATACGGTCGGGGA 19434 Query 65322 TCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGACTCTG 65381 | | || || ||||| ||||||| | || || || || || ||| | || Sbjct 19433 TACCAGGAACGTTCTGGATGGAACCACCGTGAGCGATGATACGGTTCTTCATTGTGTCGT 19374 Query 65382 ACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAACTCGC 65441 |||||| ||| || | || | | | ||| | | |||| ||| ||||| || | Sbjct 19373 TCCACAATCCCTGCTCAACGAGTTCGCGGAGCAACCAAGGGTTGACGACCTGGAATTCAC 19314 Query 65442 CGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGC 65501 | | || |||||||| ||||||||||| ||| ||| || || |||| || | Sbjct 19313 CAGCGAGGACACGACGAGAGTAGATGTTGGAGGTGTAGGGCTCGAAACATTCGTTGAAAC 19254 Query 65502 CTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCAATC 65561 | | || || |||||||| || ||||||||||||| ||| | ||||| || | | Sbjct 19253 CCAAGATCTGACTTGTAGATGCGGTAGGCATGGGAGCGAGCAAGAGCGAGTTGCGGAGAC 19194 Query 65562 CGTTCATTTCAATGTTG----TGACGCAATTCGTCCCAGTTCCACA--TCGGTTTATCGT 65615 ||| | | | || ||| ||| || | |||||| ||| | |||| || Sbjct 19193 CGTGCTTGGCGATCTTGGCCTTGAGGCTAG----CCCAGTCCCAAAGATCGGAAGGA-GT 19139 Query 65616 CGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTGG----CCGGTGAACCG 65671 |||| || ||||| || | || || ||| | |||| | || || ||| Sbjct 19138 -GACACCC------CACATGTCGTACTGGAG--TTC--ACCCTGGGAAGCAGGAGAGCCG 19090 Query 65672 AGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA-GCTGGTCTCGAGTGCGGC 65730 | | | ||||| || | ||| | || | | || | | | ||| || ||||| Sbjct 19089 GCGTAGGTCTCGTAGGTGCCGTGCTCTTGAGCCAACTCGCACGATCG-CTCAAGAGCGGC 19031 Query 65731 AAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCAT-CGCTCTCGTACG 65789 | || ||||||||||| || | || | | ||| ||||| || | ||| | | Sbjct 19030 ATGGTAGATGGTCTCGAAGATCTGGACGTTCAATCGACGAGCCTCGGGCGAT-TCGAA-G 18973 Query 65790 GCATA-CCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGA 65848 || || ||||| | | || | ||||| ||||| ||||| || |||||||| || || Sbjct 18972 GCGTAACCCATGATCATGAAGGCATCGGCAAGACCCTGAACACCGATACCGATAGGGCGG 18913 Query 65849 TGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGA 65908 ||||||| || ||||| | ||||| ||||||||||| ||||| ||||| || Sbjct 18912 TGACGCATGTTAGAACGACGAGCCTCCTCAACAGGGTAGTAGTTGATGTCGATGATCTTG 18853 Query 65909 TTCAAATTGCGTGTCACCACATGCACGATA--CGTCGCAA--TTGTTCGAAATCAAAATG 65964 ||||| || | |||| |||| | | |||| | || | || | || Sbjct 18852 TTCAAGTT-----------CTTGCA-GATAGCCTTGGCAACCTCGTGCAAACGCT---TG 18808 Query 65965 TTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTT 66024 | | || | | ||| | | | | || ||||||| || | || || ||||| Sbjct 18807 TAGTCGTAGACCTTG-GTGACAGGGTCGATGAAGGTGGGAAGAGCGATGGAGGCAAGGTT 18749 Query 66025 GCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCA 66084 ||| ||||| | ||| || ||||| | ||||||| || || ||||||| || ||| Sbjct 18748 GCAAACAGCAACCTCATCGGGAGCACTGTACTCGATGATCTCAGTGCACAAGTTGGAGCA 18689 Query 66085 GCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCAT 66144 || || || | |||| || || |||||| ||| || |||||||| | || Sbjct 18688 CTTGATAGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTGGCAGCGTCCTTGTAGAGGAT 18629 Query 66145 GTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTT 66204 | | || | || ||||| || ||||| | |||||||| ||| || | ||||| Sbjct 18628 GAAGGGGTTACCAGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGAGCCTT 18569 Query 66205 CACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTC 66264 || || || | | ||||| |||||| | |||||||| | || || || Sbjct 18568 GACGGTGCGCTTGGAACGACCTTCAGCCTCGTAACGCTCGTAGAGACGCTCAAACTCCTC 18509 Query 66265 ACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATC 66324 ||| | || | |||| || |||| || || ||||| |||||||| || || | Sbjct 18508 ACCGTAGCAGTCAGCGAGACCGGGGCACTCGTTGGGGCACATGAGCGACCATTCGCCGTT 18449 Query 66325 CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGC 66384 ||| || || | ||| || ||||| || | |||||| ||||||||||| || || || Sbjct 18448 CTGCTCAACCCTCTTCATGAAGAGATCGGGAACCCAGAGAGCGTAGAAGAGTTCACGGGC 18389 Query 66385 TCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATG 66444 || || || | ||||| || ||||||||||||||||||||||||| || | || Sbjct 18388 ACGAACTTCTTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAAGACATCCGAGTG 18329 Query 66445 CCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTA 66504 ||| || || | ||||||||| || | || ||| ||| ||||| ||||||||||| Sbjct 18328 CCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTACCACCCTGGTCGACGTA 18269 Query 66505 GCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGT 66564 || ||| |||||||||||||| | ||| || |||| ||||| || ||||| Sbjct 18268 ACGGGCGGTGTTGTTGAAGACACGAAGCATGGGAACGATACCGTTGCTGACACCGTTGGT 18209 Query 66565 GCCGTCGATGGGGGATCCTCGTGCC-CGTATATCGTGAACATTCAGACCAATACCACCGG 66623 |||| | ||| || || || || || || ||||| |||| |||||| || |||| Sbjct 18208 GCCGGCAATGTACGAGCC-AGTACCTCGAATGCAGTGAATGTTCAAACCAATGCCGCCGG 18150 Query 66624 CCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAGTC 66681 | ||||| ||||| ||||| || | |||| | | ||||| || || ||||| Sbjct 18149 CGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTC--GTAAATGCCATCGATCGAGTC 18092 Query 66682 ACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAA 66741 | |||| |||| | ||| | || || || || || | ||| ||| | || ||| Sbjct 18091 ATCCTTCATGGCAACAAGGAAACAGGACGAGAGCTGAGGATGGGGAGTGCCAGCGTTGAA 18032 Query 66742 GAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGAC 66801 |||||| || | ||||| |||||||| | | |||||| ||||| |||||||| | Sbjct 18031 GAGGGTTGGCGAGGCGTGAGTAAAGTACTTTTGCGACATGAGGTTGTAAGTCTCGATAGC 17972 Query 66802 AGCATCAATGTTTTCGCCATGAATCCCGAGTGC-ACATCGCATCAGGAGGTATTGAGGCC 66860 | || |||| | ||| ||||| || | || ||| ||||| || | || || || | Sbjct 17971 ACTCTCGATGTCCTGGCCGTGAATACCAACAGCGACA-CGCATGAGCATGTGCTGGGGAC 17913 Query 66861 GTTCGACCAGCCGATCC-TTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGA 66914 | || | || || || ||||| | | |||||||| || || || ||||||| Sbjct 17912 GCTC-AGCAACCTTGCCGTTGATGCGGAGCAAGTAGGAACGCTCGAGAGTCTTGA 17859 >seq544 Length=9533 Score = 224 bits (248), Expect = 8e-54 Identities = 373/537 (69%), Gaps = 5/537 (1%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || |||||||||||||| | |||||| |||| | Sbjct 4008 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAGATCGACCTC 3949 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| | |||||||||| | | | ||| | || | || ||||| Sbjct 3948 TCCAAGGACCTTCATGACTGGGACAACAAGCTCAACGA-CAACGAGCGTCACTTCATCTC 3890 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || | || ||||| || ||||| || ||||||||||| ||||| | | || || Sbjct 3889 CCACGTCCTCGCCTTCTTCGCTGCTTCCGATGGTATCGTCAACGAGAACCTCGTCGAGCG 3830 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 |||| ||||| || | | ||||| || || |||||||| |||||||| || Sbjct 3829 TTTCAGTTCCGAGGTTCAGGCTGCCGAGGCTCGATGCTTCTACGGTTTCCAGATCATGAT 3770 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| ||||||| |||| || |||||||||| || |||||| | |||| | Sbjct 3769 GGAGAACATCCACTCCGAGACCTATTCGCTTCTCATCGACACTTACATCCGTGAGCCCGA 3710 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | | || ||| | || | ||| |||| || || |||| || |||| ||| || || Sbjct 3709 GCAGCGCGAATTCCTCTTTGACGCCGTCGAAACCATCCCGGTCGTCAAGCAGAAGGCTGA 3650 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATT 61502 |||||| || ||||| | | || ||| || |||| || || | | || || Sbjct 3649 CTGGGCCCTCCGCTGGATTAGCGACCGAAAGGCCACCTTTGCAGAGCGTCTCGTTGCCTT 3590 Query 61503 TGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAA 61562 ||||| || |||||| | || ||| || || || ||| | ||||| ||| | ||||| Sbjct 3589 TGCGGCCGTAGAGGGTATCTTCTTCTCCGGTTCTTTCGCCTCTATCTTCTGGCTCAAGAA 3530 Query 61563 ACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 ||||| || ||||||||||| |||||| ||| ||| | || || ||||||||||| Sbjct 3529 GCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGG 3473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397523194956080