Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1 484 3e-134 >seq1 Length=1882320 Score = 484 bits (536), Expect = 3e-134 Identities = 528/699 (76%), Gaps = 43/699 (6%) Strand=Plus/Minus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||||| | | ||| | ||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 1103337 TGTGATACGCTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAAT 1103278 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | ||||| |||||||||||| |||||||||||||| ||||||| |||||| |||||| Sbjct 1103277 GCCATCTAAGGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGA 1103218 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 ||||||| |||||| ||||||||||||| || ||||||||||| ||||||||| | Sbjct 1103217 TGAAAAGAACTTTGAAAAGAGAGTTAAACAGTACGTGAAATTGCCAAAAGGGAAGGGTAG 1103158 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGT 262 | |||| ||| | | ||| || | | | |||| | ||| | | Sbjct 1103157 GAGGTCAGAGATGCGGCCTGGGATTCAGCCTTGCTTTTGCTTGGTGT--TTTTCCCAGTT 1103100 Query 263 --CAGGCCAGCATCAGCTC-GGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCG 319 ||||||| | || | | |||| | ||| || || |||| ||||| | ||||| Sbjct 1103099 TGCAGGCCAACGTCGGTTTTGGGCACT-GGAGAATGGTGGGAGGAACGTGGCACTCTTCG 1103041 Query 320 GGGGGTGTTATAGCC-------------------CGGG---GTGGAATGCGGCC----CG 353 ||| ||||||||||| |||| | ||| || || || Sbjct 1103040 GGGTGTGTTATAGCCTCCTACTGGATACAGCGACCGGGACCGAGGACAGCAGCGTACTCG 1102981 Query 354 C-----CTGGACTGAGGTCCGCGCTCCGGCTAGGATGCTGGCGTAATGGTTGTAAGCGGC 408 | | || || || | | | || |||| | |||| |||||| | | | Sbjct 1102980 CAAGAGCGGGCCTTCGGGCACCTTTACGCTTAGGGCGTTGGCATAATGGCCCTCTACCAC 1102921 Query 409 CCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCC 468 |||||||| |||||||||||||||||||||||| ||||||||| |||||||| ||||||| Sbjct 1102920 CCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATGCGAGTCTTTGGGTGGCAAACCC 1102861 Query 469 GTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATCC 528 | ||| |||||||||||| |||||||| || | |||||||||||||||||||| Sbjct 1102860 ATAGGCGCAATGAAAGTGAATTCAGGTGGGATCCGC--AAGGTGCACCATCGACCGATCC 1102803 Query 529 TGATGTCTTCGGA----TGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGT 584 | | ||||| | |||||||||||||||||||| |||||||||||||||||||||| Sbjct 1102802 TCACGTCTTTTAAGTCGTGGATTTGAGTAAGAGCATACCTGTTGGGACCCGAAAGATGGT 1102743 Query 585 GAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCT 644 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1102742 GAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGGTTCT 1102683 Query 645 GGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||||||||||||||||||||||||||||||||||||| Sbjct 1102682 GACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 1102644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079993607900