Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1 313 5e-83 >seq1 Length=1882320 Score = 313 bits (346), Expect = 5e-83 Identities = 260/315 (83%), Gaps = 6/315 (2%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGC-TTTGGCGGGTCGC---CGGCTTC 75 || ||||||||| ||||||||||||| | || | ||| | || | | || |||| Sbjct 1104760 GAACGAGACCTTGACCTGCTAAATAGACTGGTTGACATTTTGTTGGCCCCTTACGTCTTC 1104701 Query 76 TTAGAGGGACTATCGGC--TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATG 133 |||||||||| |||| | || || |||||| | |||||||||||||||||||||| Sbjct 1104700 TTAGAGGGACAATCGACCGTCTAGGTGATGGAGGCAAAAGGCAATAACAGGTCTGTGATG 1104641 Query 134 CCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCT 193 ||||||||||||| |||| ||||||||||||||||||||||| |||||||| | ||| Sbjct 1104640 CCCTTAGATGTTCCGGGCTGCACGCGCGCTACACTGACAGAGACAACGAGTGGGGCCCCT 1104581 Query 194 TGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAA 253 || ||| || | |||||||| ||||| ||||| ||||||||||||||| |||| ||| || Sbjct 1104580 TGTCCGAAATGACTGGGTAAACTTGTGAAACTTTGTCGTGCTGGGGATGGAGCTTTGTAA 1104521 Query 254 TTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACG 313 || ||||||||||||||||||| |||||||||||| ||||||||| ||||||| |||| Sbjct 1104520 TTTTTGCTCTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGACTACG 1104461 Query 314 TCCCTGCCCTTTGTA 328 ||||||||||||||| Sbjct 1104460 TCCCTGCCCTTTGTA 1104446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947197177344