Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq79 329 3e-85 seq236 185 7e-42 >seq79 Length=472637 Score = 329 bits (364), Expect = 3e-85 Identities = 1007/1530 (66%), Gaps = 54/1530 (4%) Strand=Plus/Plus Query 65429 ACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAG 65488 || |||||||| |||| || ||||| || ||||||||||| ||| || |||||| Sbjct 420065 ACCTGGAACTCTCCGGCGAGCACACGGCGCGAGTAGATGTTGGATGTGTACGGCTCAAAG 420124 Query 65489 GATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAAT 65548 | || || ||| ||||| || || || || || |||||||| |||| | ||| Sbjct 420125 CACTCGTTGAAGCCGAGAATCTGACTCGTCGAGGCGGTAGGCATGGGGGCGAGGAGCAAG 420184 Query 65549 GAGTTTCGCAATCCGTTCATTTCAATGTTG----TGACGCAATTCGTCCCAGTTCCACAT 65604 ||||| |||| |||| | | |||| ||| ||| || || |||||| ||||| Sbjct 420185 GAGTTGCGCAGACCGTGCTTGGCAATCTTGGCCTTGA-GC---TCAGCCCAGTCCCACA- 420239 Query 65605 CGGTTT-ATCGTC-GACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTG--- 65659 ||| || | |||| || ||||| || | ||||| || ||| Sbjct 420240 -GGTCCGATGGGGTGACACCC------CACATGTCATACTGCAGCTCACC----CTGCGA 420288 Query 65660 -GCCGGTGAACCGAGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA-GCTGG 65717 || || || ||| | | | |||||| || | ||| | || || | || | | | Sbjct 420289 AGCAGGCGAGCCGGCGTACGTCTCGTACGTGCCGTGCTCTTGAGCCAGCTCGCACGATCG 420348 Query 65718 TCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCAT 65777 |||||| || || ||||| ||||| || || | |||||| || ||||| Sbjct 420349 -CTCGAGCGCAGCGTGGTAAATAGTCTCAAAGATCTGCACGTTAAGTCGGCGAGCCTCGG 420407 Query 65778 CGCTCTCGTACGGCATA-CCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATA 65836 |||| ||| | || ||||| | | || | ||| || ||||| ||||| || ||| Sbjct 420408 GCGACTCGAACG-CGTAGCCCATGATCATGAAGGCGTCAGCAAGACCCTGAACACCGATA 420466 Query 65837 CCGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATA 65896 |||||||| || || |||| ||||| | | || || || |||||||| ||||| Sbjct 420467 CCGATGGGTCGGTGGCGCATGTTGGATCTGCGAGCTTCCTCGACGGGGTAGTAGTTGATG 420526 Query 65897 TCGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAA--TTGTTCGA 65954 ||||| || || | || | || || ||| | | |||| |||| Sbjct 420527 TCGATGATCTTGTTGAGGTT-CTTG----CAGATGGCCT-----TGGCAACCTTGTGGAG 420576 Query 65955 AATCAAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAG 66014 | | || || | ||| || | ||| | | | | |||| |||| || |||| | Sbjct 420577 ACGCTTAAAGTC--GTACG-TCTTG-GTGACCGGGTCGATAAACGTGGGCAGCGCAATCG 420632 Query 66015 ATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACA 66074 | || |||||||| ||||| | |||||| || || | ||||||| || ||||| |||| Sbjct 420633 AGGCAAGGTTGCACACAGCGACCTCGTCTGGCGCACTGTACTCGATGATCTCGGTACACA 420692 Query 66075 GATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCT 66134 | || ||| |||||||| | |||| || || |||||||| ||| ||||||| Sbjct 420693 GGTTGGAGCACTTGATGGTGCCGAGGTTCTTCTGGTTGCTCTTGCGGTTGGCAGCATCCT 420752 Query 66135 TGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAG 66194 |||| | ||| |||| | || ||||| || ||||| | |||||||| ||| || Sbjct 420753 TGTAGAGGATGAACGGGTTACCAGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCT 420812 Query 66195 CGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTT 66254 | ||||| || || || | | ||| | | ||||| | ||||||||| | | Sbjct 420813 TCTGAGCCTTGACGGTGCGCTTGGAACGACCCTCGGCCTCGTAGCGCTCGTAGAGGCGCT 420872 Query 66255 CGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACC 66314 | || ||||| | |||| |||| || |||| || || ||||| ||||||| Sbjct 420873 CAAACTCGTCACCATAGCAGTCGGCAAGACCGGGGCACTCGTTGGGGCACATGAGCGACC 420932 Query 66315 AATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGA 66374 | || || | ||| || || | ||| || || || || | |||||| |||||||||| Sbjct 420933 AGTCTCCGTTCTGCTCGACCCTCTTCATGAAGAGGTCGGGAACCCAGAGTGCGTAGAAGA 420992 Query 66375 GATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGA 66434 | || || || || |||||| | ||||| || ||||| | |||||||||||| || | Sbjct 420993 GCTCTCGGGCACGCACCTCCTCCTTACCGTGGTTCTTGCGGAGGTCGAGGAACTCGAACA 421052 Query 66435 TGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTT 66494 || | ||||| || || | ||||||||| || | || ||| ||| |||||| | Sbjct 421053 CATCCGAGTGCCAAGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCACCCT 421112 Query 66495 GGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATT 66554 |||||||||||||||| ||||||||||| || | ||| || |||| ||||| Sbjct 421113 GGTCGACGTAGCGAGCCGTGTTGTTGAAGACGCGAAGCATGGGCACGATACCGTTGCTGA 421172 Query 66555 TGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC-CGTATATCGTGAACATTCAGACCA 66613 || ||||||||| | ||| || || || || || || ||| | || ||||| Sbjct 421173 CACCGTTGGTGCCGGCAATGTACGAGCC-AGTACCTCGGATGCAGTGGATGTTGAGACCG 421231 Query 66614 ATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGT 66671 ||||||||||| ||||| ||||| ||||| || | |||| | | ||||| | Sbjct 421232 ATACCACCGGCAGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTC--GTAGATGCCAT 421289 Query 66672 CAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGG 66731 | || ||||| |||| ||||| | |||| | || || || ||||| | ||||| Sbjct 421290 CGATCGAGTCGTCCTTCATGGTGACGAGGAAACACGACGAGAGCTGGGGGTGTGGTGTCC 421349 Query 66732 CGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACG 66791 |||| |||||| ||||| | |||||| |||||| | | | |||||| ||||| | Sbjct 421350 CGGCGTTGAAGAGAGTGGGCGAAGCGTGGGTAAAGCACTTCTGCGACATGAGGTTGTAGG 421409 Query 66792 TCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC-ACATCGCATCAGGAGG 66850 | |||||| | || |||| | ||| || || |||| || ||| ||||| || | | Sbjct 421410 TTTCGATGGCGCTCTCGATGTCCTGGCCGTGGATACCGACGGCGACA-CGCATGAGCATG 421468 Query 66851 TATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTC 66910 | || || || ||| || | | ||||| | | | |||||| || || || ||| Sbjct 421469 TGCTGGGGTCGCTCGGTCACCTTGCCGTTGATGCGGAGGAGGTAGGAACGCTCGAGAGTC 421528 Query 66911 TTGATACCAAAGTACGAGTAATTGAAATCG 66940 |||| |||||| | ||| | ||| ||| Sbjct 421529 TTGAAGCCAAAGAAGTTGTAGTGGAAGTCG 421558 >seq236 Length=132806 Score = 185 bits (204), Expect = 7e-42 Identities = 374/546 (68%), Gaps = 23/546 (4%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || |||||||||||||| | |||||| | || || Sbjct 4180 ATCTGGCAAATGTACAAGAAGGCTGAGGCTTCCTTCTGGACCGCCGAGGAGATTGACCTG 4121 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAA---CAAC-------ATTT 61196 ||||| || | | || ||||| | | ||| |||| |||| | || Sbjct 4120 TCCAAGGATCTTCACGATTGGGAC-----AACAAGC--TGAATCACAACGAGCGTCACTT 4068 Query 61197 CATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATT 61256 ||| || || | || ||||| |||||||| |||||||||||||| ||||| | | Sbjct 4067 CATCTCCCACGTCCTCGCCTTCTTCGCCGCTTCCGACGGTATCGTCAACGAGAACCTTGT 4008 Query 61257 GGAACGTTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 || |||||| || | |||||||| | | ||||| || || ||||| || ||||||| Sbjct 4007 CGAGCGTTTCAGCTC-CGAGGTGCAGGCCGCCGAGGCTCGATGCTTCTATGGTTTCCAGA 3949 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 | |||||||| ||||| |||| ||| | |||||||| || |||||| | | Sbjct 3948 TCATGATGGAGAACATCCACAGCGAGACCTACTCGCTGCTCATCGACACCTACATCCGCG 3889 Query 61376 AGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGA 61435 ||| | | | || || | || | || ||||||| || || | || ||| || Sbjct 3888 AGCCCGAGCAGCGCGAGTTCCTCTTTGACGCTGTCGAGACAATCCCCGTCGTCAAGGAGA 3829 Query 61436 AAGCGGATTGGGC-CTTCAATTGGATCACCAGTACAACG-GCTACATTTGGTGAACGATT 61493 | || || ||||| |||| ||||||| | | | ||| ||||| || | || || | Sbjct 3828 AGGCCGACTGGGCTCTTC-GCTGGATCAGC-GACCGACGCGCTACCTTCGCCGAGCGTCT 3771 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 | || ||||| | || ||||| | || ||| ||| || || ||| | ||||| || Sbjct 3770 CGTTGCCTTTGCCGCCGTTGAGGGCATCTTCTTCTCTGGCTCCTTCGCCTCCATCTTCTG 3711 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 | | ||||| ||||| |||||||||||||| |||||| ||| || | || || || || Sbjct 3710 GCTCAAGAAGCGTGGTCTTATGCCCGGTCTCACCTTCTCCAACGAACTCATCTCGCGTGA 3651 Query 61614 CGAGGG 61619 |||||| Sbjct 3650 CGAGGG 3645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566556082720