Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20esculenta_20[genbank_20GCA_5F000819925.1_202015-01-16] 298 sequences; 20,196,985 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq257 86.0 3e-11 seq168 84.2 9e-11 >seq257 Length=45560 Score = 86.0 bits (94), Expect = 3e-11 Identities = 109/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 449006 GTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCC--GGCCG 449063 ||||||||||| ||| | | |||||||||||||||||||| || | || || || Sbjct 32589 GTCATGCGCGAGGGGAACCCGTGCGGGTTCATGATGATGTCCGGGTTGATACCCTGGTCG 32648 Query 449064 CGTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGC 449123 | | || ||||||||||| | | ||| | || ||| ||| ||||| |||||||| | Sbjct 32649 C--TAAACGGCATGTCCTCCTGCTGGACGATGAGTCCGCAGACACCCTTTTGGCCGTGAC 32706 Query 449124 GGCTGCAGAACTTGTCCCCCTGCTCGGG 449151 | | |||||||||| || ||||||| Sbjct 32707 GCGAGGAGAACTTGTCGCCGAGCTCGGG 32734 >seq168 Length=223977 Score = 84.2 bits (92), Expect = 9e-11 Identities = 233/351 (66%), Gaps = 6/351 (2%) Strand=Plus/Minus Query 88974 CGCAAGTTCACCGCCGTGGGCCGAGAGTGCAGGGACAAGGCCGTGGTCGTGGTGGACGAC 89033 |||||| ||| |||| ||| | |||| || | || ||| || | || |||||| Sbjct 43235 CGCAAGCTCAACGCCATGGCGCTCGAGTTCAACGGAAAAAATGTGCTCATCGTCGACGAC 43176 Query 89034 TCTGTCGTGCGCGGCACCACATCCAAGTTCATAATCGACCTCCTTCGCAAGTCTGGCGCC 89093 || |||| || || ||||| || || || ||| | | || | | || ||| Sbjct 43175 TCCATCGTCCGAGGTACCACCTCAAAAGAGATCATCCAGATGGCACGAGATGCAGGTGCC 43116 Query 89094 ACCAAGGTCTACCTCGCTTCTTGCTCTCCCCCGATCCGTTACCCCAACGTGTACGGCATC 89153 | |||||| | | ||||| || | || || ||||| ||| | ||||| ||||||||| Sbjct 43115 AAAAAGGTCATCATGGCTTCGTGTGCGCCACCCATCCGATACTCGAACGTATACGGCATC 43056 Query 89154 GACATACCGTCG-GCCAAGGAGCTCATTGCTTCTGGTCGCACCGAGCACGAGGTGGCTCT 89212 ||||| || ||| | ||| || ||| | || | ||| ||||||| | |||| || Sbjct 43055 GACATGCCCTCGCGTCAA-GAACTCGTCGCCTATGGACGCACCGTCGAGCAGGTCGCCGA 42997 Query 89213 CCTCCTCGGAGCCGACCAGGTCATCTATCAGAGTGTCGACGACTTGCAAGCGGC-CTGT- 89270 | || ||||||| ||||||||| |||| |||| ||| | | || | |||| Sbjct 42996 GTACATCCAAGCCGACATGGTCATCTACCAGACGCTCGAGGACCT--CATCGACTCTGTC 42939 Query 89271 CGCCAGTTCAATCCCTCCATCACGGCCTTTGAGGCCTCTGTCTTTGTCGGC 89321 | |||||||| || ||| | |||||| ||| ||||||| |||| Sbjct 42938 CAGCAGTTCAACTCCGAGCTCAAGCACTTTGACTGCTCCGTCTTTGACGGC 42888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084731046063804