Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20hordei_20[genbank_20GCA_5F000286035.1_202012-05-30] 713 sequences; 21,150,702 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq555 318 5e-82 seq580 192 5e-44 >seq555 Length=342432 Score = 318 bits (352), Expect = 5e-82 Identities = 825/1235 (67%), Gaps = 38/1235 (3%) Strand=Plus/Minus Query 65719 CTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATC 65778 |||||| ||||| || ||||||||||| || | || | ||| |||||| Sbjct 64483 CTCGAGAGCGGCGTGGTAGATGGTCTCGAAGATCTGCACGTTCAAACGACGCGCCTCAGG 64424 Query 65779 GCTCTCGTACGGCATACCC-ATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATAC 65837 | |||| | ||||||||| || | | || | ||||| ||||| ||||| || |||| Sbjct 64423 GGACTCGAA-GGCATACCCCATGATCATGAATGCATCGGCGAGACCCTGAACACCGATAC 64365 Query 65838 CGATGGGACGATGACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATAT 65897 |||||||||| ||||||| ||||| || | || || || ||||| || ||||| | Sbjct 64364 CGATGGGACGGTGACGCATGTTGGATCGACGAGCTTCTTCAACGGGGTAATAGTTGATGT 64305 Query 65898 CGATAATGCGATTCAAATTGCGTGTCACCACATGCACGATACGTCGCAATTGTTCGAAAT 65957 |||| || ||||| || | || || ||| | | | || | | | | Sbjct 64304 CGATGATCTTGTTCAAGTT-CTTG----CAGATG---GCTTTGGCGACCTCATGCAGACG 64253 Query 65958 C--AAAATGTTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGA 66015 | ||||| | || | | || | | | | || |||| ||||| | || Sbjct 64252 CTTAAAATCGTA-----GACCTTG-GTAACAGGGTCGATGAAGGTGGGGAGGGCGATGGA 64199 Query 66016 TGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAG 66075 || | |||||||||||| | ||| || || || | ||||||| ||||||||||| || Sbjct 64198 GGCCAAGTTGCAGACAGCGACCTCATCGGGGGCAGAGTACTCGATGATTTCGGTGCAGAG 64139 Query 66076 ATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATT-GCATGCATCCT 66134 || ||| ||||| || | |||| || || |||||| || ||| || |||| Sbjct 64138 GTTGGAGCACTTGATGGTACCGAGGTTCTTCTGGTTGGACTTGCGGTTAGCA-GCGTCCT 64080 Query 66135 TGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAG 66194 |||| | ||| | ||| | |||||||| || ||||| | |||||||| ||| || Sbjct 64079 TGTAGAGGATGAAAGGATTACCGGTCTCGGTCTGAGACTCGAGGATGGCGTACCAGAGCT 64020 Query 66195 CGCGTGCCTTCACCGTACG--TACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTG 66252 | ||||| || || || ||| || | ||| || | |||| | |||||||| | Sbjct 64019 TCTGGGCCTTGACGGTTCGCTTACAGCG-TCCCTCAGCCT-CGTAGCGCTCGTAGAGACG 63962 Query 66253 TTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGA 66312 || || ||||| | |||| || | || |||| || || ||||| ||||| Sbjct 63961 CTCAAACTCGTCACCGTAGCAGTCGGCAAGGCCGGGGCACTCGTTGGGGCACATGAGCGA 63902 Query 66313 CCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAA 66372 |||||| |||| ||| || || | ||| || ||||| || | ||| || |||||||| Sbjct 63901 CCAATCGCCATTCTGCTCGACCCTCTTCATGAAGAGATCGGGGACCCAAAGAGCGTAGAA 63842 Query 66373 GAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAA 66432 ||| || || || || ||||| | ||||| || ||||||||||||||||||||||| Sbjct 63841 GAGCTCACGGGCACGAACTTCCTCCTTACCGTGGTTCTTGCGCAAGTCGAGGAACTCAAA 63782 Query 66433 GATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACC 66492 || || | ||||| || || | |||||| || || | || ||| ||| ||||| Sbjct 63781 GACATCCGAGTGCCAAGGCTCAATGTAGATAGCAAAGGCACCAGGACGCTTGTTACCACC 63722 Query 66493 TTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGA 66552 |||||||||||| ||||| |||||||||||||| | ||| || |||| ||||| Sbjct 63721 TTGGTCGACGTAACGAGCAGTGTTGTTGAAGACACGGAGCATGGGCACGATACCGTTGCT 63662 Query 66553 TTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC-CGTATATCGTGAACATTCAGAC 66611 || ||||| ||| | ||| || || || || || || || | || |||| Sbjct 63661 GACACCGTTGGTACCGGCAATGTAAGAGCC-GGTACCACGAATGCAATGGATGTTGAGAC 63603 Query 66612 CAATACCACCGGCCGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCC 66669 | ||||||||||| ||||| ||||| ||||| || | |||| | | || || Sbjct 63602 CGATACCACCGGCGGTCTTGGAGATCATGGCACAGGTCTTGAGGGTGTC--GTAGATCCC 63545 Query 66670 GTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGT 66729 ||| || |||||| |||| ||||| | ||| | || || || || || | ||| || Sbjct 63544 GTCGATCGAGTCATCCTTCATGGTGACAAGGAAACACGACGAGAGCTGAGGGTGGGGGGT 63485 Query 66730 GGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTA 66789 |||| |||||| || || | || || |||||||| | | |||||| ||||| Sbjct 63484 ACCGGCGTTGAAGAGCGTTGGCGAGGCATGAGTAAAGTACTTTTGCGACATGAGGTTGTA 63425 Query 66790 CGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAG 66849 |||||| || || ||||||| | ||| ||||| |||| ||| ||||| | | Sbjct 63424 CGTCTCAATAGCACTCTCAATGTCCTGGCCGTGAATACCGACAGCAACACGCATGATCAT 63365 Query 66850 GTATTGAGGCCGTT---CGACC-AGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCA 66905 || || || || | ||||| |||| |||||| | | |||||||| || || | Sbjct 63364 GTGCTGGGGACGCTCAGCGACCTTGCCG----TTGATACGGAGCAAGTAGGATCGCTCGA 63309 Query 66906 GGGTCTTGATACCAAAGTACGAGTAATTGAAATCG 66940 ||||||||| ||| ||| | ||| | ||| ||| Sbjct 63308 GGGTCTTGAAACCGAAGAAGTTGTAGTGGAAGTCG 63274 >seq580 Length=301176 Score = 192 bits (212), Expect = 5e-44 Identities = 381/557 (68%), Gaps = 9/557 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| |||||||| ||||| || |||||||||||||| | ||||| |||| | Sbjct 41234 ATCTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCCGAGGAAATCGACCTC 41175 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| | | |||||||| | | | ||| | || | || ||||| Sbjct 41174 TCCAAGGACCTTCACGACTGGGACAACAAGCTCAACGA-CAACGAGCGTCACTTCATCTC 41116 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 || || | || ||||| |||||||| |||||||||||||| || || | | || || Sbjct 41115 TCACGTCCTTGCCTTCTTCGCCGCTTCTGACGGTATCGTCAACGAAAACCTCGTCGAGCG 41056 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 ||| ||||| || | | ||||| || || |||||||| |||||||| || Sbjct 41055 CTTCAGTTCCGAGGTCCAGGCCGCCGAGGCCCGATGCTTCTACGGTTTCCAGATCATGAT 40996 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| ||||||| || | ||| | |||||||| || |||||| | |||| | Sbjct 40995 GGAGAACATCCACTCCGAAACCTACTCGCTCCTCATCGACACCTACATCCGCGAGCCCGA 40936 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | | || || | || | ||| ||||||| || || | || ||| ||| || || Sbjct 40935 GCAGCGCGAGTTCCTCTTTGACGCCGTCGAGACCATCCCCGTCGTCAAGAAGAAGGCCGA 40876 Query 61443 TTGGG-CCTTCAATTGGATC-ACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCA 61500 |||| ||||| | |||||| || | ||| ||| || || | ||| || | | || Sbjct 40875 ATGGGCCCTTCGA-TGGATCAACGACCGCAA-GGCCACCTTCGCTGAGCGTCTCGTTGCC 40818 Query 61501 TTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAG 61560 ||||| | ||||| ||| | || ||| || || |||||| | ||||| ||| | ||| Sbjct 40817 TTTGCCGCCGTCGAAGGTATCTTCTTCTCAGGCTCCTTTGCCTCGATCTTCTGGCTCAAG 40758 Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620 || || || || ||||||||||| |||||| || ||| | || || || |||||||| Sbjct 40757 AAGCGCGGTCTCATGCCCGGTCTCACCTTCTCTAACGAGCTCATCTCTCGTGACGAGGGT 40698 Query 61621 ATGCATTGTGATTTTGC 61637 | || |||||||| Sbjct 40697 CTTCACACCGATTTTGC 40681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397564545258320