Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001599495.1_202016-03-01] 56 sequences; 19,606,871 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq21 327 9e-85 seq29 250 2e-61 >seq21 Length=360673 Score = 327 bits (362), Expect = 9e-85 Identities = 630/924 (68%), Gaps = 10/924 (1%) Strand=Plus/Plus Query 65996 AACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATAC 66055 ||| |||| || || | || ||||||||||| || || | |||||| |||||| | ||| Sbjct 299831 AACGTGGGCAGTGCGATCGAGGCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTAC 299890 Query 66056 TCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTC 66115 |||| || ||||| |||| || ||| || ||||| | |||| || || ||| Sbjct 299891 TCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTC 299950 Query 66116 TTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCA 66175 ||||| ||| || |||||||||| ||| | || |||| ||||| || ||||| Sbjct 299951 TTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCG 300010 Query 66176 ATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCG 66235 | |||||||| ||| || | || || || || || || | ||| | | ||| Sbjct 300011 AGGATGGCGTACCAGAGCTTCTGCGCTTTGACGGTGCGCTTCGAGCGACCCTCGGCCTCG 300070 Query 66236 TAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTG 66295 || | ||||||||| | || || ||||| | |||| ||||| || |||| | Sbjct 300071 TAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCG 300130 Query 66296 TGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGT 66355 | || ||||| |||||||| || || | ||| || || | ||| || |||||||| Sbjct 300131 TTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGC 300190 Query 66356 ATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGC 66415 | |||||| || |||||||| || || || || |||||| | ||||| || |||||| Sbjct 300191 ACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGC 300250 Query 66416 AAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCC 66475 | ||||||||||||||||| ||| | ||||||||||| | ||| || || || | || Sbjct 300251 AGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCG 300310 Query 66476 ATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATC 66535 ||| ||| |||||| |||||||||||||| || ||||||||||| || | ||| Sbjct 300311 GGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATG 300370 Query 66536 GGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC-CGTAT 66594 || || | ||||| || ||||||||| | ||| || || ||||| || || Sbjct 300371 GGCACAATGCCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCC-GGTGCCACGGAT 300429 Query 66595 ATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCAC 66654 || | || || || || |||||||||||||| ||||| |||||| | Sbjct 300430 GCAATGGATGTTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAG 300489 Query 66655 TGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAG 66714 || | | |||||||| || |||||| |||| ||||| | ||| |||| || || Sbjct 300490 GGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAG 300549 Query 66715 TTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCG 66774 || || | || || |||| |||||| || || | ||||| |||||||| | | Sbjct 300550 CTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTG 300609 Query 66775 AGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC 66834 ||||| ||||||||||||||| | || |||| | ||| || || |||| || Sbjct 300610 CGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGC 300669 Query 66835 ACATCGCATCAGGAGGTATTGAGGCCG---TTCGACC-AGCCGATCCTTGATATGCATTA 66890 |||||| || | || || || || | ||||| |||| ||||| | | | Sbjct 300670 GACTCGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCG----TTGATGCGGAGCA 300725 Query 66891 AGTAGGAGCGTTCCAGGGTCTTGA 66914 | ||||| || || || ||||||| Sbjct 300726 AATAGGAACGCTCGAGCGTCTTGA 300749 >seq29 Length=43685 Score = 250 bits (276), Expect = 2e-61 Identities = 384/540 (71%), Gaps = 11/540 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| ||||| || |||||||||||||| | |||||| |||| | Sbjct 30541 ATTTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 30482 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| | | |||||||| | | | ||| | ||| | || || || Sbjct 30481 TCCAAGGACCTCCACGACTGGGACAACAAGCTGAACGA-CAATGAGCGCCACTTTATCTC 30423 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 |||||| | |||||||| || || ||||| ||||||||||| ||||| | | || || Sbjct 30422 GCATGTGCTTGCGTTCTTCGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCG 30363 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 |||| ||| || || | | ||||| ||||| |||||||| |||||||| || Sbjct 30362 TTTCAGTTCGGAAGTTCAGGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGAT 30303 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| |||||||||||| ||| | |||||||| || |||||| | |||| | Sbjct 30302 GGAGAACATCCACTCGGAGACCTACTCGCTGCTCATCGACACTTACATCCGTGAGCCTGA 30243 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | | |||||| |||| | ||| ||||||| || |||| || |||| ||| || || Sbjct 30242 GCAGCGTGAATATCTGTTTGACGCCGTCGAGACCATCCCGGTCGTCAAGCAGAAGGCCGA 30183 Query 61443 TTGGGC-CTTCAATTGGATCACCAGTACAA-CG-GCTACATTTGGTGAACGATTGCTGGC 61499 ||||| |||| | ||||||| | |||| || || || || | || || || | || Sbjct 30182 CTGGGCTCTTCGA-TGGATCAGC--GACAAGCGTGCCACTTTCGCCGAGCGTCTGGTCGC 30126 Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 ||||| | |||||||| | |||||| || || || ||| | ||||| ||| | || Sbjct 30125 GTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCTGGCTCAA 30066 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 ||| || || || ||||||||||| || ||| ||| ||| | || || || |||||||| Sbjct 30065 GAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGTGACGAGGG 30006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567728659840