Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001660065.1_202016-06-08] 4,767 sequences; 20,622,051 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq4260 327 9e-85 seq3421 250 2e-61 >seq4260 Length=107242 Score = 327 bits (362), Expect = 9e-85 Identities = 630/924 (68%), Gaps = 10/924 (1%) Strand=Plus/Plus Query 65996 AACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATAC 66055 ||| |||| || || | || ||||||||||| || || | |||||| |||||| | ||| Sbjct 47032 AACGTGGGCAGTGCGATCGAGGCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTAC 47091 Query 66056 TCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTC 66115 |||| || ||||| |||| || ||| || ||||| | |||| || || ||| Sbjct 47092 TCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTC 47151 Query 66116 TTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCA 66175 ||||| ||| || |||||||||| ||| | || |||| ||||| || ||||| Sbjct 47152 TTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCG 47211 Query 66176 ATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCG 66235 | |||||||| ||| || | || || || || || || | ||| | | ||| Sbjct 47212 AGGATGGCGTACCAGAGCTTCTGCGCTTTGACGGTGCGCTTCGAGCGACCCTCGGCCTCG 47271 Query 66236 TAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTG 66295 || | ||||||||| | || || ||||| | |||| ||||| || |||| | Sbjct 47272 TAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCG 47331 Query 66296 TGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGT 66355 | || ||||| |||||||| || || | ||| || || | ||| || |||||||| Sbjct 47332 TTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGC 47391 Query 66356 ATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGC 66415 | |||||| || |||||||| || || || || |||||| | ||||| || |||||| Sbjct 47392 ACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGC 47451 Query 66416 AAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCC 66475 | ||||||||||||||||| ||| | ||||||||||| | ||| || || || | || Sbjct 47452 AGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCG 47511 Query 66476 ATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATC 66535 ||| ||| |||||| |||||||||||||| || ||||||||||| || | ||| Sbjct 47512 GGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATG 47571 Query 66536 GGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC-CGTAT 66594 || || | ||||| || ||||||||| | ||| || || ||||| || || Sbjct 47572 GGCACAATGCCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCC-GGTGCCACGGAT 47630 Query 66595 ATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCAC 66654 || | || || || || |||||||||||||| ||||| |||||| | Sbjct 47631 GCAATGGATGTTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAG 47690 Query 66655 TGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAG 66714 || | | |||||||| || |||||| |||| ||||| | ||| |||| || || Sbjct 47691 GGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAG 47750 Query 66715 TTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCG 66774 || || | || || |||| |||||| || || | ||||| |||||||| | | Sbjct 47751 CTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTG 47810 Query 66775 AGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC 66834 ||||| ||||||||||||||| | || |||| | ||| || || |||| || Sbjct 47811 CGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGC 47870 Query 66835 ACATCGCATCAGGAGGTATTGAGGCCG---TTCGACC-AGCCGATCCTTGATATGCATTA 66890 |||||| || | || || || || | ||||| |||| ||||| | | | Sbjct 47871 GACTCGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCG----TTGATGCGGAGCA 47926 Query 66891 AGTAGGAGCGTTCCAGGGTCTTGA 66914 | ||||| || || || ||||||| Sbjct 47927 AATAGGAACGCTCGAGCGTCTTGA 47950 >seq3421 Length=130295 Score = 250 bits (276), Expect = 2e-61 Identities = 384/540 (71%), Gaps = 11/540 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| ||||| || |||||||||||||| | |||||| |||| | Sbjct 34842 ATTTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 34783 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| | | |||||||| | | | ||| | ||| | || || || Sbjct 34782 TCCAAGGACCTCCACGACTGGGACAACAAGCTGAACGA-CAATGAGCGCCACTTTATCTC 34724 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 |||||| | |||||||| || || ||||| ||||||||||| ||||| | | || || Sbjct 34723 GCATGTGCTTGCGTTCTTCGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCG 34664 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 |||| ||| || || | | ||||| ||||| |||||||| |||||||| || Sbjct 34663 TTTCAGTTCGGAAGTTCAGGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGAT 34604 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| |||||||||||| ||| | |||||||| || |||||| | |||| | Sbjct 34603 GGAGAACATCCACTCGGAGACCTACTCGCTGCTCATCGACACTTACATCCGTGAGCCTGA 34544 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | | |||||| |||| | ||| ||||||| || |||| || |||| ||| || || Sbjct 34543 GCAGCGTGAATATCTGTTTGACGCCGTCGAGACCATCCCGGTCGTCAAGCAGAAGGCCGA 34484 Query 61443 TTGGGC-CTTCAATTGGATCACCAGTACAA-CG-GCTACATTTGGTGAACGATTGCTGGC 61499 ||||| |||| | ||||||| | |||| || || || || | || || || | || Sbjct 34483 CTGGGCTCTTCGA-TGGATCAGC--GACAAGCGTGCCACTTTCGCCGAGCGTCTGGTCGC 34427 Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 ||||| | |||||||| | |||||| || || || ||| | ||||| ||| | || Sbjct 34426 GTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCTGGCTCAA 34367 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 ||| || || || ||||||||||| || ||| ||| ||| | || || || |||||||| Sbjct 34366 GAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGTGACGAGGG 34307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397544902168880