Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736155.1_202016-09-20] 2,505 sequences; 20,063,391 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3 327 9e-85 seq2408 250 2e-61 >seq3 Length=70329 Score = 327 bits (362), Expect = 9e-85 Identities = 630/924 (68%), Gaps = 10/924 (1%) Strand=Plus/Minus Query 65996 AACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATAC 66055 ||| |||| || || | || ||||||||||| || || | |||||| |||||| | ||| Sbjct 23346 AACGTGGGCAGTGCGATCGAGGCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTAC 23287 Query 66056 TCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTC 66115 |||| || ||||| |||| || ||| || ||||| | |||| || || ||| Sbjct 23286 TCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTC 23227 Query 66116 TTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCA 66175 ||||| ||| || |||||||||| ||| | || |||| ||||| || ||||| Sbjct 23226 TTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCG 23167 Query 66176 ATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCG 66235 | |||||||| ||| || | || || || || || || | ||| | | ||| Sbjct 23166 AGGATGGCGTACCAGAGCTTCTGCGCTTTGACGGTGCGCTTCGAGCGACCCTCGGCCTCG 23107 Query 66236 TAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTG 66295 || | ||||||||| | || || ||||| | |||| ||||| || |||| | Sbjct 23106 TAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCG 23047 Query 66296 TGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGT 66355 | || ||||| |||||||| || || | ||| || || | ||| || |||||||| Sbjct 23046 TTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGC 22987 Query 66356 ATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGC 66415 | |||||| || |||||||| || || || || |||||| | ||||| || |||||| Sbjct 22986 ACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGC 22927 Query 66416 AAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCC 66475 | ||||||||||||||||| ||| | ||||||||||| | ||| || || || | || Sbjct 22926 AGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCG 22867 Query 66476 ATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATC 66535 ||| ||| |||||| |||||||||||||| || ||||||||||| || | ||| Sbjct 22866 GGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATG 22807 Query 66536 GGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC-CGTAT 66594 || || | ||||| || ||||||||| | ||| || || ||||| || || Sbjct 22806 GGCACAATGCCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCC-GGTGCCACGGAT 22748 Query 66595 ATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCAC 66654 || | || || || || |||||||||||||| ||||| |||||| | Sbjct 22747 GCAATGGATGTTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAG 22688 Query 66655 TGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAG 66714 || | | |||||||| || |||||| |||| ||||| | ||| |||| || || Sbjct 22687 GGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAG 22628 Query 66715 TTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCG 66774 || || | || || |||| |||||| || || | ||||| |||||||| | | Sbjct 22627 CTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTG 22568 Query 66775 AGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC 66834 ||||| ||||||||||||||| | || |||| | ||| || || |||| || Sbjct 22567 CGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGC 22508 Query 66835 ACATCGCATCAGGAGGTATTGAGGCCG---TTCGACC-AGCCGATCCTTGATATGCATTA 66890 |||||| || | || || || || | ||||| |||| ||||| | | | Sbjct 22507 GACTCGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCG----TTGATGCGGAGCA 22452 Query 66891 AGTAGGAGCGTTCCAGGGTCTTGA 66914 | ||||| || || || ||||||| Sbjct 22451 AATAGGAACGCTCGAGCGTCTTGA 22428 >seq2408 Length=74372 Score = 250 bits (276), Expect = 2e-61 Identities = 384/540 (71%), Gaps = 11/540 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| ||||| || |||||||||||||| | |||||| |||| | Sbjct 34837 ATTTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 34778 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| | | |||||||| | | | ||| | ||| | || || || Sbjct 34777 TCCAAGGACCTCCACGACTGGGACAACAAGCTGAACGA-CAATGAGCGCCACTTTATCTC 34719 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 |||||| | |||||||| || || ||||| ||||||||||| ||||| | | || || Sbjct 34718 GCATGTGCTTGCGTTCTTCGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCG 34659 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 |||| ||| || || | | ||||| ||||| |||||||| |||||||| || Sbjct 34658 TTTCAGTTCGGAAGTTCAGGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGAT 34599 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| |||||||||||| ||| | |||||||| || |||||| | |||| | Sbjct 34598 GGAGAACATCCACTCGGAGACCTACTCGCTGCTCATCGACACTTACATCCGTGAGCCTGA 34539 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | | |||||| |||| | ||| ||||||| || |||| || |||| ||| || || Sbjct 34538 GCAGCGTGAATATCTGTTTGACGCCGTCGAGACCATCCCGGTCGTCAAGCAGAAGGCCGA 34479 Query 61443 TTGGGC-CTTCAATTGGATCACCAGTACAA-CG-GCTACATTTGGTGAACGATTGCTGGC 61499 ||||| |||| | ||||||| | |||| || || || || | || || || | || Sbjct 34478 CTGGGCTCTTCGA-TGGATCAGC--GACAAGCGTGCCACTTTCGCCGAGCGTCTGGTCGC 34422 Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 ||||| | |||||||| | |||||| || || || ||| | ||||| ||| | || Sbjct 34421 GTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCTGGCTCAA 34362 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 ||| || || || ||||||||||| || ||| ||| ||| | || || || |||||||| Sbjct 34361 GAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGTGACGAGGG 34302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397555862373200