Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1236 242 6e-62 >seq1236 Length=3301 Score = 242 bits (268), Expect = 6e-62 Identities = 188/220 (85%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||| | Sbjct 1461 GTACAAAGGGCAGGGACGTAGTCAACGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 1404 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||| ||| | || ||||||| ||||| || ||||| ||| || Sbjct 1403 CTCGTTGAAGAGCAAAAATTACAAAGCTCCATCCCCAGCACGACAAAGTTTCACAAGTTT 1344 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | | | |||| ||||| | | |||||||| | |||||||||||||||||| Sbjct 1343 ACCCAGTCATTTCGGACAAGGGGCTCCACTCGTTGTCTCTGTCAGTGTAGCGCGCGTGCA 1284 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 219 |||| ||||||||||||||||||||||||||||||||||| Sbjct 1283 GCCCGGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 1244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751985590270