Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1236 370 4e-100 >seq1236 Length=3301 Score = 370 bits (410), Expect = 4e-100 Identities = 251/280 (90%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| |||||||||||||||||||||||| ||||||||| |||||||| |||||| Sbjct 3007 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATGCGAGTCTTTGGGTGGCAAACC 3066 Query 468 CGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATC 527 | | ||| |||||||||||| |||||||| || | ||||||||||||||||||| Sbjct 3067 CATAGGCGCAATGAAAGTGAATTCAGGTGGGATCCGC--AAGGTGCACCATCGACCGATC 3124 Query 528 CTGATGTCTTCGGA----TGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGG 583 || | ||||| | |||||||||||||||||||| ||||||||||||||||||||| Sbjct 3125 CTCACGTCTTTTAAGTCGTGGATTTGAGTAAGAGCATACCTGTTGGGACCCGAAAGATGG 3184 Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 3185 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGGTTC 3244 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||||||||||||||||||||||||||||||||||| Sbjct 3245 TGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 3284 Score = 210 bits (232), Expect = 9e-52 Identities = 155/181 (86%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 17 TAGCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAG 76 |||| ||||| | | ||| | ||||||||||||||||||||||||||| ||||||| | Sbjct 2585 TAGCTTTGTGATACGCTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTG 2644 Query 77 GTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATC 136 |||||| | ||||| |||||||||||| |||||||||||||| ||||||| |||||| Sbjct 2645 GTAAATGCCATCTAAGGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACAGTGATG 2704 Query 137 GAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 ||||||||||||| |||||| ||||||||||||| || ||||||||||| |||||||| Sbjct 2705 GAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAACAGTACGTGAAATTGCCAAAAGGGAA 2764 Query 197 G 197 | Sbjct 2765 G 2765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079957571900