Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736185.1_202016-09-20] 1,978 sequences; 19,929,430 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1519 327 9e-85 seq1914 250 2e-61 >seq1519 Length=103858 Score = 327 bits (362), Expect = 9e-85 Identities = 630/924 (68%), Gaps = 10/924 (1%) Strand=Plus/Plus Query 65996 AACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATAC 66055 ||| |||| || || | || ||||||||||| || || | |||||| |||||| | ||| Sbjct 43605 AACGTGGGCAGTGCGATCGAGGCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTAC 43664 Query 66056 TCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTC 66115 |||| || ||||| |||| || ||| || ||||| | |||| || || ||| Sbjct 43665 TCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTC 43724 Query 66116 TTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCA 66175 ||||| ||| || |||||||||| ||| | || |||| ||||| || ||||| Sbjct 43725 TTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCG 43784 Query 66176 ATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCG 66235 | |||||||| ||| || | || || || || || || | ||| | | ||| Sbjct 43785 AGGATGGCGTACCAGAGCTTCTGCGCTTTGACGGTGCGCTTCGAGCGACCCTCGGCCTCG 43844 Query 66236 TAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTG 66295 || | ||||||||| | || || ||||| | |||| ||||| || |||| | Sbjct 43845 TAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCCAGACCAGGGCACTCG 43904 Query 66296 TGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGT 66355 | || ||||| |||||||| || || | ||| || || | ||| || |||||||| Sbjct 43905 TTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGC 43964 Query 66356 ATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGC 66415 | |||||| || |||||||| || || || || |||||| | ||||| || |||||| Sbjct 43965 ACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGC 44024 Query 66416 AAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCC 66475 | ||||||||||||||||| ||| | ||||||||||| | ||| || || || | || Sbjct 44025 AGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCG 44084 Query 66476 ATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATC 66535 ||| ||| |||||| |||||||||||||| || ||||||||||| || | ||| Sbjct 44085 GGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATG 44144 Query 66536 GGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC-CGTAT 66594 || || | ||||| || ||||||||| | ||| || || ||||| || || Sbjct 44145 GGCACAATGCCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCC-GGTGCCACGGAT 44203 Query 66595 ATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCAC 66654 || | || || || || |||||||||||||| ||||| |||||| | Sbjct 44204 GCAATGGATGTTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAG 44263 Query 66655 TGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAG 66714 || | | |||||||| || |||||| |||| ||||| | ||| |||| || || Sbjct 44264 GGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAG 44323 Query 66715 TTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCG 66774 || || | || || |||| |||||| || || | ||||| |||||||| | | Sbjct 44324 CTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTG 44383 Query 66775 AGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC 66834 ||||| ||||||||||||||| | || |||| | ||| || || |||| || Sbjct 44384 CGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGC 44443 Query 66835 ACATCGCATCAGGAGGTATTGAGGCCG---TTCGACC-AGCCGATCCTTGATATGCATTA 66890 |||||| || | || || || || | ||||| |||| ||||| | | | Sbjct 44444 GACTCGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCG----TTGATGCGGAGCA 44499 Query 66891 AGTAGGAGCGTTCCAGGGTCTTGA 66914 | ||||| || || || ||||||| Sbjct 44500 AATAGGAACGCTCGAGCGTCTTGA 44523 >seq1914 Length=69059 Score = 250 bits (276), Expect = 2e-61 Identities = 384/540 (71%), Gaps = 11/540 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| ||||| || |||||||||||||| | |||||| |||| | Sbjct 34833 ATTTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 34774 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| | | |||||||| | | | ||| | ||| | || || || Sbjct 34773 TCCAAGGACCTCCACGACTGGGACAACAAGCTGAACGA-CAATGAGCGCCACTTTATCTC 34715 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 |||||| | |||||||| || || ||||| ||||||||||| ||||| | | || || Sbjct 34714 GCATGTGCTTGCGTTCTTCGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCG 34655 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 |||| ||| || || | | ||||| ||||| |||||||| |||||||| || Sbjct 34654 TTTCAGTTCGGAAGTTCAGGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGAT 34595 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| |||||||||||| ||| | |||||||| || |||||| | |||| | Sbjct 34594 GGAGAACATCCACTCGGAGACCTACTCGCTGCTCATCGACACTTACATCCGTGAGCCTGA 34535 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | | |||||| |||| | ||| ||||||| || |||| || |||| ||| || || Sbjct 34534 GCAGCGTGAATATCTGTTTGACGCCGTCGAGACCATCCCGGTCGTCAAGCAGAAGGCCGA 34475 Query 61443 TTGGGC-CTTCAATTGGATCACCAGTACAA-CG-GCTACATTTGGTGAACGATTGCTGGC 61499 ||||| |||| | ||||||| | |||| || || || || | || || || | || Sbjct 34474 CTGGGCTCTTCGA-TGGATCAGC--GACAAGCGTGCCACTTTCGCCGAGCGTCTGGTCGC 34418 Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 ||||| | |||||||| | |||||| || || || ||| | ||||| ||| | || Sbjct 34417 GTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCTGGCTCAA 34358 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 ||| || || || ||||||||||| || ||| ||| ||| | || || || |||||||| Sbjct 34357 GAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGTGACGAGGG 34298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397558415877920