Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20maydis_20[genbank_20GCA_5F001736215.1_202016-09-20] 2,695 sequences; 20,132,962 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2275 324 1e-83 seq2563 250 2e-61 >seq2275 Length=103831 Score = 324 bits (358), Expect = 1e-83 Identities = 629/924 (68%), Gaps = 10/924 (1%) Strand=Plus/Plus Query 65996 AACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATAC 66055 ||| |||| || || | || ||||||||||| || || | |||||| |||||| | ||| Sbjct 43635 AACGTGGGCAGTGCGATCGAGGCGAGGTTGCACACTGCCACCTCGTCGGGAGCGCTGTAC 43694 Query 66056 TCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTC 66115 |||| || ||||| |||| || ||| || ||||| | |||| || || ||| Sbjct 43695 TCGATGATCTCGGTACACAAGTTGGAGCACTTGATCGTGCCGAGGTTCTTCTGGTTGCTC 43754 Query 66116 TTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCA 66175 ||||| ||| || |||||||||| ||| | || |||| ||||| || ||||| Sbjct 43755 TTGCGGTTGGCGGCGTCCTTGTACAGGATGAAAGGGTTGCCCGTCTCGGTCTGTGACTCG 43814 Query 66176 ATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTTTGCGTTCG 66235 | |||||||| ||| || | || || || || || || | ||| | | ||| Sbjct 43815 AGGATGGCGTACCAGAGCTTCTGCGCTTTGACGGTGCGCTTCGAGCGACCCTCGGCCTCG 43874 Query 66236 TAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACATGGACACTTG 66295 || | ||||||||| | || || ||||| | |||| |||| || |||| | Sbjct 43875 TAGCGCTCGTAGAGGCGCTCAAACTCGTCACCGTAGCAGTCGGCTAGACCAGGGCACTCG 43934 Query 66296 TGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAATAGATCAGGT 66355 | || ||||| |||||||| || || | ||| || || | ||| || |||||||| Sbjct 43935 TTGGGGCACATGAGCGACCAGTCGCCGTTCTGCTCGACCCTCTTCATGAAGAGATCAGGC 43994 Query 66356 ATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGC 66415 | |||||| || |||||||| || || || || |||||| | ||||| || |||||| Sbjct 43995 ACCCAGAGTGCATAGAAGAGCTCACGCGCACGCACCTCCTCCTTTCCGTGGTTCTTGCGC 44054 Query 66416 AAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCC 66475 | ||||||||||||||||| ||| | ||||||||||| | ||| || || || | || Sbjct 44055 AGGTCGAGGAACTCAAAGACGTCCGAGTGCCATGGTTCAATGTAAATAGCAAAGGCACCG 44114 Query 66476 ATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATC 66535 ||| ||| |||||| |||||||||||||| || ||||||||||| || | ||| Sbjct 44115 GGACGCTTGTTGCCACCCTGGTCGACGTAGCGCGCAGTGTTGTTGAAGACGCGGAGCATG 44174 Query 66536 GGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCC-CGTAT 66594 || || | ||||| || ||||||||| | ||| || || ||||| || || Sbjct 44175 GGCACAATGCCGTTGCTGACACCGTTGGTGCCGGCAATGTACGAGCC-GGTGCCACGGAT 44233 Query 66595 ATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCAC 66654 || | || || || || |||||||||||||| ||||| |||||| | Sbjct 44234 GCAATGGATGTTGAGGCCGATGCCACCGGCCGTCTTGGAGATCATGGCACAAGTCTTGAG 44293 Query 66655 TGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAG 66714 || | | |||||||| || |||||| |||| ||||| | ||| |||| || || Sbjct 44294 GGTATCGTAGATGCCGTCGATCGAGTCATCCTTCATGGTAACAAGGAAGCACGACGAGAG 44353 Query 66715 TTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCG 66774 || || | || || |||| |||||| || || | ||||| |||||||| | | Sbjct 44354 CTGCGGGTGCGGGGTACCGGCGTTGAAGAGCGTAGGCGAGGCGTGGGTAAAGTACTTTTG 44413 Query 66775 AGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC 66834 ||||| ||||||||||||||| | || |||| | ||| || || |||| || Sbjct 44414 CGACATAAGGTTGTACGTCTCGATGGCGCTCTCGATGTCCTGGCCGTGGATGCCGACAGC 44473 Query 66835 ACATCGCATCAGGAGGTATTGAGGCCG---TTCGACC-AGCCGATCCTTGATATGCATTA 66890 |||||| || | || || || || | ||||| |||| ||||| | | | Sbjct 44474 GACTCGCATGAGCATGTGCTGGGGACGCTCTGCGACCTTGCCG----TTGATGCGGAGCA 44529 Query 66891 AGTAGGAGCGTTCCAGGGTCTTGA 66914 | ||||| || || || ||||||| Sbjct 44530 AATAGGAACGCTCGAGCGTCTTGA 44553 >seq2563 Length=74346 Score = 250 bits (276), Expect = 2e-61 Identities = 384/540 (71%), Gaps = 11/540 (2%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 ||||||| |||||||| ||||| || |||||||||||||| | |||||| |||| | Sbjct 34835 ATTTGGCAAATGTACAAGAAGGCCGAGGCTTCCTTCTGGACCGCAGAGGAGATCGACCTT 34776 Query 61147 TCCAAAGACATGAATGACTGGGAGC----GTTTATCGAGCGGTGAACAACATTTCATTAA 61202 ||||| ||| | | |||||||| | | | ||| | ||| | || || || Sbjct 34775 TCCAAGGACCTCCACGACTGGGACAACAAGCTGAACGA-CAATGAGCGCCACTTTATCTC 34717 Query 61203 ACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACG 61262 |||||| | |||||||| || || ||||| ||||||||||| ||||| | | || || Sbjct 34716 GCATGTGCTTGCGTTCTTCGCTGCGTCGGATGGTATCGTCAACGAGAACCTCGTTGAGCG 34657 Query 61263 TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCAT 61322 |||| ||| || || | | ||||| ||||| |||||||| |||||||| || Sbjct 34656 TTTCAGTTCGGAAGTTCAGGCCGCCGAGGCTCGTTGCTTCTACGGTTTCCAGATCATGAT 34597 Query 61323 GGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGC 61382 |||||| |||||||||||| ||| | |||||||| || |||||| | |||| | Sbjct 34596 GGAGAACATCCACTCGGAGACCTACTCGCTGCTCATCGACACTTACATCCGTGAGCCTGA 34537 Query 61383 GGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 | | |||||| |||| | ||| ||||||| || |||| || |||| ||| || || Sbjct 34536 GCAGCGTGAATATCTGTTTGACGCCGTCGAGACCATCCCGGTCGTCAAGCAGAAGGCCGA 34477 Query 61443 TTGGGC-CTTCAATTGGATCACCAGTACAA-CG-GCTACATTTGGTGAACGATTGCTGGC 61499 ||||| |||| | ||||||| | |||| || || || || | || || || | || Sbjct 34476 CTGGGCTCTTCGA-TGGATCAGC--GACAAGCGTGCCACTTTCGCCGAGCGTCTGGTCGC 34420 Query 61500 ATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAA 61559 ||||| | |||||||| | |||||| || || || ||| | ||||| ||| | || Sbjct 34419 GTTTGCCGCCGTCGAGGGCATCTTTTTCTCGGGCTCATTCGCCTCGATCTTCTGGCTCAA 34360 Query 61560 GAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGG 61619 ||| || || || ||||||||||| || ||| ||| ||| | || || || |||||||| Sbjct 34359 GAAGCGCGGTCTCATGCCCGGTCTCACGTTCTCCAACGAGCTCATCTCGCGTGACGAGGG 34300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397554941754800