Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= AAMG01002120.1 Length=347 Score E Sequences producing significant alignments: (Bits) Value seq177 114 3e-23 >seq177 Length=158834 Score = 114 bits (126), Expect = 3e-23 Identities = 182/257 (71%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 50 TCACCGTGGTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGATTCCATCG 109 |||||||||||||||||| |||| || ||||| ||||||||||||| || | ||| Sbjct 42918 TCACCGTGGTTGCCCTCGTTGTTGGCAAGACCGAAAAGGCGCTCCTTGAGCATGCGATCC 42977 Query 110 CGCTCGTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCG-CCTTGTCACTGAACCCCGC 168 ||||||| || || || | || || ||| | | | |||||| || || || Sbjct 42978 TTGCCGTTCCAGAGAGCAAGACTCAAGC-CCATCCTGCAGTGGTTGTCAGACAAACCGGC 43036 Query 169 CAGGCCGTCCTCGCCCCAACGGTAGGCGCGGCTGCGTGCATGGTCATGGGGGAAGTAGGC 228 || || ||||| ||||| ||||||| ||||| || || || || ||||||| | Sbjct 43037 GAGACCATCCTCACCCCATCGGTAGGTACGGCTACGAGCGGACTCGTGAGGGAAGTGAGA 43096 Query 229 CCAGGCGTCGCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCGCTCAG 288 ||| || || |||| ||| |||||| || || || || ||||| || || || || Sbjct 43097 CCAAGCATCTCCATTGGCCGAGTAGTCCTCTCGAACGGTACCCCACTGTCGCTCAGAGAG 43156 Query 289 GTAGGGGCCCCACTCGC 305 ||| |||||||| |||| Sbjct 43157 GTAAGGGCCCCA-TCGC 43172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1007997530400