Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq241 403 1e-107 seq180 215 4e-51 >seq241 Length=120793 Score = 403 bits (446), Expect = 1e-107 Identities = 1158/1758 (66%), Gaps = 60/1758 (3%) Strand=Plus/Plus Query 65204 TGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATGTCAATG 65263 || || || | ||||||| ||| |||| | ||| || || ||||||||||||||| Sbjct 69374 TGGATGTTGAGCGACTGAGACTGGCAGATGAATGCACCTCGGTCGGCAGCCATGTCAATG 69433 Query 65264 ATACGACGTCCCGAT-ATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATTGGA-A 65321 || | | || | | |||||||| ||||||||||| || | | | | | || | Sbjct 69434 ATG-GCCTTCTGGCTGATCTCCCATACGGTCTTGTAGAG-CTTCTTGATACGGTCGGGGA 69491 Query 65322 TCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGACTCTG 65381 | | || || ||||| ||||||| | ||||| ||||| || ||| | || Sbjct 69492 TGCCGGGAACGTTCTGGATCGAACCACCGTGGGCAATGATGCGGTTCTTCATGGTGTCGT 69551 Query 65382 ACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAACTCGC 65441 ||||||||| || | || | | | ||| |||||| || |||||||||| Sbjct 69552 TCCACAAACCTTGCTCAACGAGCTCGCGGAGCAACCAGGGATTGACCACCTGGAACTCGC 69611 Query 65442 CGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTGTTGC 65501 ||| ||||||||||| || |||||||| ||| ||||||||| | || || | Sbjct 69612 CGGCGAGTACACGACGAGAGTAAATGTTGGAAGTGTAAGGTTCAAAGCACTCGTTGAAAC 69671 Query 65502 CTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGAGTTTCGCAATC 65561 | ||||| || ||||| || || ||||| || |||| | | || || |||| | Sbjct 69672 CGAGAATCTGACTTGTAGAGGCGGTAGGCATCGGGGCGAGGAGGAGCGAATTGCGCAGAC 69731 Query 65562 CGTTCATTTCAATGTTG----TGACGCAATTCGTCCCAGTTCCACATCGGTTT--ATCGT 65615 ||| | | |||| ||| ||| || || |||||| ||| | ||| | | Sbjct 69732 CGTGCTTGGCAATCTTGGCCTTGAGGC----CGGCCCAGTCCCAGA--GGTCCGAAGGGG 69785 Query 65616 CGACATCCACGGGCCACATATCCTGTTGCAGGGTTCCGATACTG----GCCGGTGAACCG 65671 |||| || ||||| || | || || || ||| || || || ||| Sbjct 69786 TGACACCC------CACATGTCGTACTGAAGCTCACC----CTGCGAAGCGGGCGAGCCG 69835 Query 65672 AGGAAACTATCGTACACTCCCTCCTCCTTGGCAAGTTGACA-GCTGGTCTCGAGTGCGGC 65730 | | ||||| || | ||||| || || | || | | | |||||| ||||| Sbjct 69836 GCATAGGTCTCGTAGGTGCCGTGCTCCTGAGCCAGCTCGCACGATCG-CTCGAGGGCGGC 69894 Query 65731 AAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTCACGTGCCTCATCGCTCTCGTACGG 65790 || |||||||| || || | |||||| ||| ||||| ||| | || Sbjct 69895 GTGGTAGATGGTCTCAAAGATCTGAACATTAAGACGACGAGCCTCGGGCGACTCAAA-GG 69953 Query 65791 CATA-CCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGAT 65849 | || ||||| | | || | ||| || ||||| || || || |||||||||||||| | Sbjct 69954 CGTAGCCCATGATCATGAAGGCGTCAGCGAGACCCTGGACACCGATACCGATGGGACGGT 70013 Query 65850 GACGCAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGAT 65909 |||||| ||||| | | ||||| || || ||||| ||||| ||||| || | Sbjct 70014 GACGCATGTTGGACCTGCGAGCCTCCTCGACGGGATAGTAGTTGATGTCGATGATCTTGT 70073 Query 65910 TCAAATTGCGTGTCACCACATGCAC---GATACGTCGC--AATTGTTCGAAATCAAAATG 65964 |||| || | || || ||| | | || ||| | | | |||||| | Sbjct 70074 TCAAGTT-CTTG----CAGATGGCCTTGGCGACCTCGTGGAGACGCTTGAAATCGTAGAT 70128 Query 65965 TTTAGGACGATCGGGAGTGCCGGACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTT 66024 ||| | || |||| | || | ||| |||| || || | || || ||||| Sbjct 70129 TTTGGT--GA-CGGG---GTCG------ATAAAGGTGGGGAGAGCGATCGAGGCAAGGTT 70176 Query 66025 GCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCA 66084 |||||| || | |||||| || || | ||||||| || |||||||| || || ||| Sbjct 70177 GCAGACGGCGACCTCGTCGGGGGCACTGTACTCGATGATCTCGGTGCAGAGGTTGGAGCA 70236 Query 66085 GCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCAT 66144 |||||||| | |||| || || |||||||||||| || |||||||| | || Sbjct 70237 CTTGATGGTGCCAAGGTTCTTCTGGTTGCTCTTGCGATTGGCAGCGTCCTTGTAGAGGAT 70296 Query 66145 GTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTT 66204 | | || | |||||||| || ||||| | |||||||| ||| || | ||||| Sbjct 70297 GAAGGGGTTACCGGTCTCGGTCTGCGACTCGAGGATGGCGTACCAGAGCTTCTGGGCCTT 70356 Query 66205 CACCGTACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTC 66264 || || || | | ||| | | ||||| | |||||||| | || || || Sbjct 70357 GACGGTGCGCTTGGAGCGACCCTCGGCCTCGTAGCGCTCGTAGAGACGCTCAAATTCGTC 70416 Query 66265 ACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATC 66324 || | |||| |||| || |||| || || ||||| |||||||| ||||| | Sbjct 70417 GCCGTAGCAGTCGGCGAGACCGGGGCACTCGTTGGGGCACATGAGCGACCAGTCACCGTT 70476 Query 66325 CTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGC 66384 ||| || || | ||| || ||||| || | |||||||||||||||||| || || || Sbjct 70477 CTGCTCAACCCTCTTCATGAAGAGATCGGGGACCCAGAGGGCGTAGAAGAGCTCTCGGGC 70536 Query 66385 TCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATG 66444 || |||||| | ||||| || || |||| ||||||||||||||||| || | || Sbjct 70537 ACGCACCTCCTCCTTTCCGTGGTTCTTACGCAGGTCGAGGAACTCAAAGACATCCGAGTG 70596 Query 66445 CCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTA 66504 ||| || || | ||||||||| || | || ||| ||| ||||| ||||||||||| Sbjct 70597 CCAAGGCTCAATGTAGATGGCAAAGGCACCAGGACGCTTGTTACCACCCTGGTCGACGTA 70656 Query 66505 GCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGT 66564 |||||| ||||| |||||||| | ||| ||||||| ||||| ||||||||| Sbjct 70657 GCGAGCCGTGTTGTTAAAGACACGAAGCATGGGTACGATACCGTTGCTGACGCCATTGGT 70716 Query 66565 GCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGC 66624 ||| | ||| ||| || |||| || ||| | || |||||||| |||||||| Sbjct 70717 ACCGGCAATGTAGGAACCGGTACCCCGAATGCAGTGGATGTTGAGACCAATGCCACCGGC 70776 Query 66625 CGTCTTCGAGATGGCAGCACA-ATC-GGCCACTGTCCGGAATATGCCGTCAATGGAGTCA 66682 ||||| ||||| || || || | | |||| | | |||||||| || ||||| Sbjct 70777 GGTCTTGGAGATCATGGCGCAGGTCTTGAGAGTGTC--GTAAATGCCGTCGATCGAGTCG 70834 Query 66683 CCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAG 66742 |||| ||||| | |||| | || || || || || | ||| || |||| |||| Sbjct 70835 TCCTTCATGGTGACGAGGAAACACGACGAGAGCTGTGGGTGGGGAGTACCGGCGTTGAAG 70894 Query 66743 AGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACA 66802 |||||||| | |||||| |||||||| | | |||||| ||||| ||||||||| || Sbjct 70895 AGGGTGGGGGAAGCGTGGGTAAAGTACTTTTGCGACATGAGGTTGTAGGTCTCGATGGCA 70954 Query 66803 GCATCAATGTTTTCGCCATGAATCCCGAGTGCACATCGCATCAGGAGGTATTGAGGCCGT 66862 || |||| | ||| || || || | ||| ||||| || | || || || ||| Sbjct 70955 CTCTCGATGTCCTGGCCGTGGATACCAACAGCAACACGCATGAGCATGTGCTGGGGACGT 71014 Query 66863 TCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCCAGGGTCTTGATACCAAAG 66922 ||| | | | | |||||| | | | ||||||||| || |||||||||| ||||||| Sbjct 71015 TCGGCGACCTTGCCGTTGATACGGAGGAGGTAGGAGCGCTCGAGGGTCTTGAAACCAAAG 71074 Query 66923 TACGAGTAATTGAAATCG 66940 | ||| | ||| ||| Sbjct 71075 AAATTGTAGTGGAAGTCG 71092 >seq180 Length=182808 Score = 215 bits (238), Expect = 4e-51 Identities = 382/549 (70%), Gaps = 11/549 (2%) Strand=Plus/Minus Query 61079 ATGAGGATATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGG 61138 |||| | || |||| |||||||||||||| ||||||||||||||||| | |||||| Sbjct 15130 ATGACCAGATCTGGCAAATGTACAAAAAGGCAGAAGCTTCCTTCTGGACCGCCGAGGAGA 15071 Query 61139 TCGATTTGTCCAAAGACATGAATGACTGGGAGCGT----TTATCGAGCGGTGAACAACAT 61194 |||| | || |||||| | | || ||||| | | ||| | ||| | || Sbjct 15070 TCGACCTCTCAAAAGACCTTCACGATTGGGACAACAAACTCAACGA-CAATGAGCGTCAC 15012 Query 61195 TTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTA 61254 ||||| || || | || ||||| ||||| || |||||||||||||| ||||| | Sbjct 15011 TTCATCTCGCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGTATCGTCAACGAGAACCTC 14952 Query 61255 TTGGAACGTTTC-GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCA 61313 | || || ||| || | | |||| || | | ||||| || || ||||||||||| || Sbjct 14951 GTCGAGCGATTCAGCTCCG-AGGTCCAGGCTGCCGAGGCCCGATGCTTCTACGGCTTTCA 14893 Query 61314 GATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAG 61373 ||| |||||||| ||||||| |||| ||| | |||||||| || |||||| | Sbjct 14892 GATCATGATGGAGAACATCCACTCCGAGACCTACTCGCTCCTCATCGACACCTACATCCG 14833 Query 61374 GGAGCGGGCGGAACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCG 61433 |||| | | || || | || | ||| ||||||| || || | || ||| Sbjct 14832 TGAGCCTGAACAGCGCGAGTTCCTCTTTGACGCCGTCGAGACCATTCCCGTAGTCAAGGA 14773 Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAA-CG-GCTACATTTGGTGAACGA 61491 ||| || || |||||| | ||||||| | |||| || || || |||| ||||| Sbjct 14772 GAAGGCTGACTGGGCCCTTCGCTGGATCAGC--GACAAGCGCGCCACCTTTGCCGAACGT 14715 Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTT 61551 | | || ||||| | ||||||||| | || ||| ||| ||||| ||| | ||||| Sbjct 14714 CTCGTTGCCTTTGCTGCCGTCGAGGGTATCTTCTTCTCTGGCTCGTTCGCCTCCATCTTC 14655 Query 61552 TGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGC 61611 ||| | ||||| ||||| || ||||||||||| |||||| ||| ||| | || || || Sbjct 14654 TGGCTCAAGAAGCGTGGTCTCATGCCCGGTCTCACCTTCTCCAACGAGCTCATCTCCCGT 14595 Query 61612 GACGAGGGC 61620 || || ||| Sbjct 14594 GATGAAGGC 14586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566812886800