Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20trichophora_20[genbank_20GCA_5F001654535.1_202016-06-02] 245 sequences; 20,691,077 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq217 91.5 6e-13 seq240 84.2 9e-11 >seq217 Length=80816 Score = 91.5 bits (100), Expect = 6e-13 Identities = 156/223 (70%), Gaps = 4/223 (2%) Strand=Plus/Plus Query 88974 CGCAAGTTCACCGCCGTGG-GC-CGAGAGTGCAGGGACAAGGCCGTGGTCGTGGTGGACG 89031 |||||| ||| |||| ||| || ||| ||| ||||| ||| || | || || | Sbjct 17032 CGCAAGCTCAACGCCATGGCGCTCGAATTTGCCA--ACAAGAACGTCCTCATTGTTGATG 17089 Query 89032 ACTCTGTCGTGCGCGGCACCACATCCAAGTTCATAATCGACCTCCTTCGCAAGTCTGGCG 89091 ||||| | |||||||| ||||| || ||| || ||| | | ||| | | |||| Sbjct 17090 ACTCTATTGTGCGCGGTACCACCTCGAAGGAGATTATCCAGATGGCTCGTGATGCAGGCG 17149 Query 89092 CCACCAAGGTCTACCTCGCTTCTTGCTCTCCCCCGATCCGTTACCCCAACGTGTACGGCA 89151 ||| |||||| | | || || ||| | || || ||||||||| | ||||||||||| | Sbjct 17150 CCAAGAAGGTCATCATGGCCTCGTGCGCACCACCTATCCGTTACTCGAACGTGTACGGTA 17209 Query 89152 TCGACATACCGTCGGCCAAGGAGCTCATTGCTTCTGGTCGCAC 89194 ||||||| || ||| |||| ||| |||| | ||| || || Sbjct 17210 TCGACATGCCTTCGCGTCAGGAACTCGTTGCCTATGGCCGAAC 17252 >seq240 Length=223170 Score = 84.2 bits (92), Expect = 9e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 349082 ATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGG 349141 ||||||||||| | |||| || || || |||||||| || || |||||| ||||| Sbjct 204589 ATCTCCTTGAGACGAGGCACACCGAGCGTGACGTTCTTACTCGACACACCGGCATAGTGG 204530 Query 349142 AAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCT 349201 ||||| | ||| |||| ||||||| |||||| ||||| | |||| | || | | || Sbjct 204529 AAGGTGTTGAGCGTCATCTGCGTGGCGGGCTCTCCGATACTCTGGGCAGCCAACGTACCG 204470 Query 349202 ACCATCTCGCCGGG 349215 |||||| ||||| Sbjct 204469 CACATCTCACCGGG 204456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084732496260510