Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ustilago_20vetiveriae_20[genbank_20GCA_5F001735935.1_202016-09-20] 5,932 sequences; 19,606,533 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq222 370 4e-100 >seq222 Length=1351 Score = 370 bits (410), Expect = 4e-100 Identities = 251/280 (90%), Gaps = 6/280 (2%) Strand=Plus/Plus Query 408 CCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACC 467 ||||||||| |||||||||||||||||||||||| ||||||||| |||||||| |||||| Sbjct 1002 CCCGTCTTGAAACACGGACCAAGGAGTCTAACATGTATGCGAGTCTTTGGGTGGCAAACC 1061 Query 468 CGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATC 527 | | ||| |||||||||||| |||||||| || | ||||||||||||||||||| Sbjct 1062 CATAGGCGCAATGAAAGTGAATTCAGGTGGGATCCGC--AAGGTGCACCATCGACCGATC 1119 Query 528 CTGATGTCTTCGGA----TGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGG 583 || | ||||| | |||||||||||||||||||| ||||||||||||||||||||| Sbjct 1120 CTCACGTCTTTTAAGTCGTGGATTTGAGTAAGAGCATACCTGTTGGGACCCGAAAGATGG 1179 Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1180 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGTAGCGGTTC 1239 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||||||||||||||||||||||||||||||||||| Sbjct 1240 TGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 1279 Score = 208 bits (230), Expect = 3e-51 Identities = 151/175 (86%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||||| | | ||| | ||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 586 TGTGATACGCTTTCTAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAAT 645 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | ||||| |||||||||||| |||||||||||||| ||||||| |||||| |||||| Sbjct 646 GCCATCTAAGGCTAAATATTGGGGAGAGACCGATAGCGAACAAGTACAGTGATGGAAAGA 705 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAG 197 ||||||| |||||| ||||||||||||| || ||||||||||| ||||||||| Sbjct 706 TGAAAAGAACTTTGAAAAGAGAGTTAAACAGTACGTGAAATTGCCAAAAGGGAAG 760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079872758600